RchiOBHm_Chr1g0376431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002159
Physical Location & Seq
Reverse (-)
63665175 .. 63665960
786 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60006

Sequence Viewer

Length: 123 bp
ATGGTGATCAGAGCTGAGTCTTCTAGCAATCCCAGCCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACAAGCACATGGACACTATTGAAGAGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

40

Amino Acids

4.64

Weight (kDa)

4.47

Isoelectric Point (pI)

97.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 74, 88, 110
AluBI AGCT 3 cut(s) 14, 40, 82
AluI AGCT 3 cut(s) 14, 40, 82
ApeKI GCWGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 64
BclI TGATCA 1 cut(s) 6
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 12
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 63
BssMI GATC 1 cut(s) 6
Bst6I CTCTTC 2 cut(s) 69, 105
BstC8I GCNNGC 2 cut(s) 38, 50
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 33, 61
BstNSI RCATGY 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 38, 50
CviAII CATG 2 cut(s) 97, 118
CviJI RGCY 5 cut(s) 14, 36, 40, 64, 82
CviKI_1 RGCY 5 cut(s) 14, 36, 40, 64, 82
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 69, 105
EarI CTCTTC 2 cut(s) 69, 105
FaeI CATG 2 cut(s) 100, 121
FaiI YATR 2 cut(s) 98, 119
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 66, 98
FatI CATG 2 cut(s) 96, 117
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 24
FspEI CC 8 cut(s) 44, 45, 46, 50, 62, 78, 83, 98
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 100, 121
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 61
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 2 cut(s) 100, 121
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 61, 79
LpnPI CCDG 2 cut(s) 46, 50
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 12, 86, 122
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 70, 106
MwoI GCNNNNNNNGC 2 cut(s) 33, 61
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 100, 121
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PscI ACATGT 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 63
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 26
SetI ASST 3 cut(s) 16, 42, 84
SgeI CNNG 7 cut(s) 36, 45, 49, 61, 70, 103, 109
SspMI CTAG 1 cut(s) 24
TseI GCWGC 1 cut(s) 52
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.