RLG00000015795

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002159
Physical Location & Seq
Reverse (-)
1476760 .. 1480714
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015795

Sequence Viewer

Length: 450 bp
ATGGTTGCTGCGATTGCATGCGCATCAATCCAGAACCCGACGTCAATACCAATCCAACCTCCGTGCGACAAAGCTCGACCTCTGAGCCGCGACCTTGGCCTCTCCACCACAAATAAACGGGAGAAGTCTTCCCTGCCTGCTCTACCGAATCGAGAAGGCGACGCCGAGCGTCAAAAGCAAGCTGACGAAGCGCCGCCCTACTTCACGAAACTAGGGTTTCGGAATGCAGCTCCTGGAAAAGTGGAGCCCTTAGGTGAAATTGTAGCTGACAGTGCCGACGACGACCCACCGCCCAAGTTGGGTCAGCAGAGCCGCCGACGACACAGACGCCGAGACCATTCTCGTCTCAGAGCTCCCAGGGCTAAAACGGCCAATTCCCCTCTTGGGCTCTTCGCCGAGACCTTAAAAGTTTTGGTCTTTCTTGGCCAAGCAGGGACCAGTGTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.13

Weight (kDa)

10.01

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 22
AccII CGCG 1 cut(s) 90
AciI CCGC 4 cut(s) 88, 194, 290, 313
AcoI YGGCCR 2 cut(s) 369, 424
AcyI GRCGYC 3 cut(s) 41, 162, 328
AfiI CCNNNNNNNGG 2 cut(s) 299, 384
AjnI CCWGG 2 cut(s) 232, 356
AluBI AGCT 6 cut(s) 74, 182, 230, 266, 353, 447
AluI AGCT 6 cut(s) 74, 182, 230, 266, 353, 447
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 3 cut(s) 327, 350, 392
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 3 cut(s) 97, 369, 424
ApeKI GCWGC 2 cut(s) 8, 227
AspLEI GCGC 2 cut(s) 23, 193
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 435
AxyI CCTNAGG 1 cut(s) 250
BalI TGGCCA 1 cut(s) 426
BanII GRGCYC 3 cut(s) 249, 355, 390
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 384
BciT130I CCWGG 2 cut(s) 234, 358
BcoDI GTCTC 3 cut(s) 327, 350, 392
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 5 cut(s) 9, 88, 194, 228, 313
BlsI GCNGC 5 cut(s) 10, 89, 195, 229, 314
Bme1390I CCNGG 2 cut(s) 234, 358
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 246, 436
BmrFI CCNGG 2 cut(s) 234, 358
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 120
BsaHI GRCGYC 3 cut(s) 41, 162, 328
BsaI GGTCTC 2 cut(s) 327, 392
BsaJI CCNNGG 3 cut(s) 94, 356, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 384
Bse1I ACTGG 1 cut(s) 438
Bse21I CCTNAGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 234, 358
BseDI CCNNGG 3 cut(s) 94, 356, 357
BseLI CCNNNNNNNGG 2 cut(s) 299, 384
BseMII CTCAG 2 cut(s) 74, 361
BseNI ACTGG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 99, 371, 426
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 299, 384
BsmAI GTCTC 3 cut(s) 327, 350, 392
BsmBI CGTCTC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 99, 371, 426
Bso31I GGTCTC 2 cut(s) 327, 392
Bsp1286I GDGCHC 3 cut(s) 249, 355, 390
BspACI CCGC 4 cut(s) 88, 194, 290, 313
BspANI GGCC 3 cut(s) 99, 371, 426
BspCNI CTCAG 2 cut(s) 75, 360
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 246, 436
BspQI GCTCTTC 1 cut(s) 395
BspTNI GGTCTC 2 cut(s) 327, 392
BsrI ACTGG 1 cut(s) 438
BssECI CCNNGG 3 cut(s) 94, 356, 357
BssNI GRCGYC 3 cut(s) 41, 162, 328
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 234, 358
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 3 cut(s) 41, 162, 328
BstC8I GCNNGC 3 cut(s) 19, 138, 180
BstDEI CTNAG 3 cut(s) 83, 250, 347
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 23, 193
BstMAI GTCTC 3 cut(s) 327, 350, 392
BstMWI GCNNNNNNNGC 7 cut(s) 14, 96, 175, 188, 272, 359, 368
BstNI CCWGG 2 cut(s) 234, 358
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 232, 356
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 3 cut(s) 99, 371, 426
BtsIMutI CAGTG 2 cut(s) 277, 445
Cac8I GCNNGC 3 cut(s) 19, 138, 180
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 2 cut(s) 23, 193
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 3 cut(s) 158, 170, 336
CviAII CATG 1 cut(s) 18
DdeI CTNAG 3 cut(s) 83, 250, 347
EaeI YGGCCR 2 cut(s) 369, 424
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 249, 355, 390
Eco31I GGTCTC 2 cut(s) 327, 392
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 353
Eco81I CCTNAGG 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 232, 356
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 3 cut(s) 249, 355, 390
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 1 cut(s) 21
FaiI YATR 1 cut(s) 19
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 5 cut(s) 9, 88, 194, 228, 313
FriOI GRGCYC 3 cut(s) 249, 355, 390
Fsp4HI GCNGC 5 cut(s) 9, 88, 194, 228, 313
FspAI RTGCGCAY 1 cut(s) 22
FspBI CTAG 1 cut(s) 212
FspI TGCGCA 1 cut(s) 22
GlaI GCGC 2 cut(s) 22, 192
GluI GCNGC 5 cut(s) 9, 88, 194, 228, 313
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 3 cut(s) 99, 371, 426
HgaI GACGC 3 cut(s) 158, 170, 336
HhaI GCGC 2 cut(s) 23, 193
Hin1I GRCGYC 3 cut(s) 41, 162, 328
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 2 cut(s) 21, 191
HinP1I GCGC 2 cut(s) 21, 191
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 3 cut(s) 84, 222, 350
Hpy188III TCNNGA 3 cut(s) 31, 152, 205
Hpy99I CGWCG 5 cut(s) 43, 164, 281, 284, 321
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 17, 227
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 96, 175, 188, 272, 359, 368
HpyF3I CTNAG 3 cut(s) 83, 250, 347
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 3 cut(s) 41, 162, 328
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 2 cut(s) 21, 191
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 3 cut(s) 235, 244, 358
LpnPI CCDG 8 cut(s) 44, 146, 150, 219, 246, 343, 370, 417
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 41
MboII GAAGA 2 cut(s) 120, 382
MhlI GDGCHC 3 cut(s) 249, 355, 390
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 2 cut(s) 258, 373
MluNI TGGCCA 1 cut(s) 426
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 69, 90, 110, 390
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 234, 358
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 2 cut(s) 234, 358
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 7 cut(s) 14, 96, 175, 188, 272, 359, 368
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 246, 436
NmeAIII GCCGAG 3 cut(s) 190, 356, 421
NsbI TGCGCA 1 cut(s) 22
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PasI CCCWGGG 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 395
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 5 cut(s) 10, 89, 195, 229, 314
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 232, 356
PspGI CCWGG 2 cut(s) 232, 356
PspN4I GGNNCC 2 cut(s) 246, 436
PspPI GGNCC 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 5 cut(s) 9, 88, 194, 228, 313
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 234, 358
SduI GDGCHC 3 cut(s) 249, 355, 390
SfaNI GCATC 1 cut(s) 32
SinI GGWCC 1 cut(s) 435
SphI GCATGC 1 cut(s) 21
Sse9I AATT 2 cut(s) 258, 373
SsiI CCGC 4 cut(s) 88, 194, 290, 313
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 232, 356
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 76, 151
TasI AATT 2 cut(s) 258, 373
TauI GCSGC 3 cut(s) 90, 196, 315
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 2 cut(s) 277, 445
TseI GCWGC 2 cut(s) 8, 227
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 2 cut(s) 277, 445
VpaK11BI GGWCC 1 cut(s) 435
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.