Rh5BG075700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002159
Physical Location & Seq
Forward (+)
6367603 .. 6375181
7579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG075700.1

Sequence Viewer

Length: 351 bp
ATGTATGAGAAGGCCATCCCTTGGATGAGAAATTATAATGGTCCGAAGCCGGCGAATCAGAAGAAGCCCTTGATCTCAGACCCGATCCTTCAATGTCCAGTACTAGGCGGAGAGGAATACCAGTTTGAAGAATTTGTGCAGGTGGATTCCGAACTTTGCTCCCCAGAAGCAGGAGGTCCAAAACATCACAGCGCACTCCCACTGGCTTTGGCCTCCTTATCCTATTGGATGGTGATCAGAGCTGAGTCTTCTAGCCATCCCAGCCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

4.69

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 21
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 21, 104, 170
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 5 cut(s) 92, 128, 302, 316, 338
AluBI AGCT 3 cut(s) 242, 268, 310
AluI AGCT 3 cut(s) 242, 268, 310
Alw21I GWGCWC 1 cut(s) 324
AlwI GGATC 1 cut(s) 79
AoxI GGCC 2 cut(s) 12, 210
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 41, 176
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 2 cut(s) 41, 176
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 292
BccI CCATC 3 cut(s) 23, 223, 264
BclI TGATCA 1 cut(s) 234
BfaI CTAG 2 cut(s) 104, 252
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 102
Bme18I GGWCC 2 cut(s) 41, 176
BmgT120I GGNCC 2 cut(s) 41, 176
BmiI GGNNCC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 104, 170
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 98, 121, 207
Bse8I GATNNNNATC 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 4 cut(s) 15, 30, 234, 256
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 21, 104, 170
BseMII CTCAG 2 cut(s) 90, 234
BseNI ACTGG 3 cut(s) 98, 121, 207
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 14, 212
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 21, 104, 170
BsnI GGCC 2 cut(s) 14, 212
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 72, 84, 234
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 14, 212
BspCNI CTCAG 2 cut(s) 89, 235
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 3 cut(s) 98, 121, 207
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 72, 84, 234
BssT1I CCWWGG 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 297, 333
BstC8I GCNNGC 3 cut(s) 51, 266, 278
BstDEI CTNAG 2 cut(s) 76, 243
BstF5I GGATG 4 cut(s) 15, 30, 234, 256
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 75, 87, 237
BstMBI GATC 3 cut(s) 72, 84, 234
BstMWI GCNNNNNNNGC 2 cut(s) 261, 289
BstNSI RCATGY 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 14, 212
BtsCI GGATG 4 cut(s) 15, 30, 234, 256
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 51, 266, 278
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 41, 176
Csp6I GTAC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 2 cut(s) 325, 346
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 76, 243
DpnI GATC 3 cut(s) 74, 86, 236
DpnII GATC 3 cut(s) 72, 84, 234
Eam1104I CTCTTC 2 cut(s) 297, 333
EarI CTCTTC 2 cut(s) 297, 333
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 41, 176
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 328, 349
FaiI YATR 4 cut(s) 6, 36, 326, 347
FalI AAGNNNNNCTT 6 cut(s) 53, 85, 269, 301, 294, 326
FatI CATG 2 cut(s) 324, 345
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 4 cut(s) 2, 37, 241, 243
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 104, 252
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 14, 212
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 328, 349
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 3 cut(s) 55, 146, 245
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 45, 60, 79, 151, 239
HpyAV CCTTC 2 cut(s) 4, 98
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 289
HpyF3I CTNAG 2 cut(s) 76, 243
Hsp92II CATG 2 cut(s) 328, 349
HspAI GCGC 1 cut(s) 192
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 3 cut(s) 72, 84, 234
LmnI GCTCC 3 cut(s) 164, 289, 307
LpnPI CCDG 9 cut(s) 63, 111, 125, 134, 156, 177, 188, 274, 278
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 2 cut(s) 104, 252
MalI GATC 3 cut(s) 74, 86, 236
MboI GATC 3 cut(s) 72, 84, 234
MboII GAAGA 5 cut(s) 73, 140, 240, 314, 350
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 31, 131
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 5 cut(s) 106, 167, 223, 298, 334
MroNI GCCGGC 1 cut(s) 49
MspI CCGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 261, 289
NaeI GCCGGC 1 cut(s) 51
NdeII GATC 3 cut(s) 72, 84, 234
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 328, 349
NlaIV GGNNCC 1 cut(s) 291
NspI RCATGY 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 130
PciI ACATGT 1 cut(s) 345
PdiI GCCGGC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 55, 146
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 345
PsiI TTATAA 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 41, 176
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 3 cut(s) 72, 84, 234
Sau96I GGNCC 2 cut(s) 41, 176
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 324
SetI ASST 5 cut(s) 144, 178, 244, 270, 312
SinI GGWCC 2 cut(s) 41, 176
Sse9I AATT 2 cut(s) 31, 131
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 104, 252
StyI CCWWGG 1 cut(s) 20
TasI AATT 2 cut(s) 31, 131
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 2 cut(s) 55, 146
TscAI CASTG 1 cut(s) 207
TseI GCWGC 1 cut(s) 280
TspRI CASTG 1 cut(s) 207
Van91I CCANNNNNTGG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 41, 176
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 349
XspI CTAG 2 cut(s) 104, 252
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.