Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Forward (+)

7461653 .. 7465476

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGAAGGGCCGAGGGGTTTCTGGTATTTTGGCATCTGGGATGAGAGGCTTACAGCTAATATATGGGTGGAGCATCCTCTTCACCAAAACCACGAAATGCAGCTTCTTCGTCAAAAGCCCAGATAAGCGAGATGTTTGGCATTCACGGTCCAGCACTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCCGCTGCTCTGGAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGGACTGAGAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

124

Amino Acids

13.54

Weight (kDa)

10.0

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	53 - 90	2e-07	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AciI	CCGC	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	186, 288
AjnI	CCWGG	2 cut(s)	177, 237
AluBI	AGCT	3 cut(s)	58, 105, 368
AluI	AGCT	3 cut(s)	58, 105, 368
AoxI	GGCC	3 cut(s)	10, 261, 331
ApeKI	GCWGC	3 cut(s)	102, 296, 368
AspS9I	GGNCC	3 cut(s)	10, 150, 332
AsuHPI	GGTGA	3 cut(s)	16, 76, 269
AvaII	GGWCC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	114, 283, 355
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	179, 239
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	3 cut(s)	103, 297, 369
BlsI	GCNGC	3 cut(s)	104, 298, 370
Bme1390I	CCNGG	2 cut(s)	179, 239
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	10, 150, 332
BmrFI	CCNGG	2 cut(s)	179, 239
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	44, 84, 339
BmuI	ACTGGG	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	13, 177, 264
Bse1I	ACTGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	179, 239
BseDI	CCNNGG	3 cut(s)	13, 177, 264
BseGI	GGATG	3 cut(s)	48, 75, 187
BseMII	CTCAG	3 cut(s)	150, 239, 353
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	114, 283, 355
BshFI	GGCC	3 cut(s)	12, 263, 333
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	12, 263, 333
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	3 cut(s)	12, 263, 333
BspCNI	CTCAG	3 cut(s)	151, 240, 354
BsrGI	TGTACA	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	13, 177, 264
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	179, 239
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	184
BstDEI	CTNAG	4 cut(s)	159, 248, 362, 372
BstF5I	GGATG	3 cut(s)	48, 75, 187
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	179, 239
BstSCI	CCNGG	2 cut(s)	177, 237
BstV1I	GCAGC	3 cut(s)	114, 283, 355
BsuRI	GGCC	3 cut(s)	12, 263, 333
BtsCI	GGATG	3 cut(s)	48, 75, 187
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	156, 197
Cfr13I	GGNCC	3 cut(s)	10, 150, 332
Csp6I	GTAC	2 cut(s)	185, 287
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	9 cut(s)	12, 51, 58, 105, 120, 200, 263, 333, 368
CviKI_1	RGCY	9 cut(s)	12, 51, 58, 105, 120, 200, 263, 333, 368
CviQI	GTAC	2 cut(s)	185, 287
DdeI	CTNAG	4 cut(s)	159, 248, 362, 372
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	177, 237
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	236
FaiI	YATR	4 cut(s)	64, 66, 227, 234
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	103, 297, 369
FokI	GGATG	3 cut(s)	55, 62, 194
Fsp4HI	GCNGC	3 cut(s)	103, 297, 369
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	3 cut(s)	103, 297, 369
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	12, 263, 333
Hin1II	CATG	1 cut(s)	236
HinfI	GANTC	1 cut(s)	209
HphI	GGTGA	3 cut(s)	16, 76, 269
Hpy188I	TCNGA	2 cut(s)	204, 249
Hpy188III	TCNNGA	2 cut(s)	302, 357
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	159, 248, 362, 372
Hsp92II	CATG	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	3 cut(s)	114, 283, 355
LweI	GCATC	3 cut(s)	44, 84, 339
MaeI	CTAG	1 cut(s)	279
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	73, 100
MlyI	GAGTC	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	179, 239
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	179, 239
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	236
NmeAIII	GCCGAG	1 cut(s)	38
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	104, 298, 370
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	177, 237
PspGI	CCWGG	2 cut(s)	177, 237
PspPI	GGNCC	3 cut(s)	10, 150, 332
RsaI	GTAC	2 cut(s)	186, 288
RsaNI	GTAC	2 cut(s)	185, 287
SatI	GCNGC	3 cut(s)	103, 297, 369
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	3 cut(s)	10, 150, 332
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	179, 239
SetI	ASST	9 cut(s)	60, 107, 168, 259, 270, 280, 292, 309, 370
SfaNI	GCATC	3 cut(s)	44, 84, 339
SinI	GGWCC	1 cut(s)	150
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	177, 237
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	274
TatI	WGTACW	1 cut(s)	184
TscAI	CASTG	2 cut(s)	163, 197
TseI	GCWGC	3 cut(s)	102, 296, 368
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	163, 197
VpaK11BI	GGWCC	1 cut(s)	150
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.