Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

59532412 .. 59536158

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTCCCATCAGGTACCAGCAACTTTGGGAGATGTACAACAAGGCTGAGGCTAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGGGGCTCTGACAGACTCCAAGAAACACTTTATAACTCATGAAACCATGAAATCCCAGTGGTTGTTGTTGGGCATCATTGTGGACATGCAAGTGGGATGGCTTCTCGATCACATCCAAGCAGCAGGAAATATTGGACCATCACCAAAGAGCATGTCTTCCTTCAGTCCATGGACCTTCACTGTCGATTCTGCTTCTTATGACGGAACCTACAGCAACTCTATAACCCTTGGCAACAACGTCACCATTCCTGGAATTGGACTTGCACCTGGTACACAGAAAGATGCAATGTACACACTGATTTCTGCAATACATGCTTTGAATAATGACACAGTGAATGCCAAGACTCGAGCAACTTCAATTAGGATCTGGTCCAGGGAAACCTCTTGGTCTGCAGCTACTCAATTCGATTTGTGCTTGGAATGTTCACAATACAACAAGCCTTGCAAACAGCGCAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

189

Amino Acids

21.15

Weight (kDa)

6.05

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	1 - 48	4.3e-16	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	5 cut(s)	17, 38, 96, 376, 395
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	424, 462
AjnI	CCWGG	4 cut(s)	87, 352, 370, 476
AluBI	AGCT	1 cut(s)	500
AluI	AGCT	1 cut(s)	500
AlwI	GGATC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	224, 497
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	3 cut(s)	239, 276, 474
AsuHPI	GGTGA	2 cut(s)	237, 337
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	3 cut(s)	239, 276, 474
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	2 cut(s)	48, 69
BbvI	GCAGC	2 cut(s)	236, 509
BccI	CCATC	3 cut(s)	17, 195, 250
BciT130I	CCWGG	4 cut(s)	89, 354, 372, 478
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	313, 495
BisI	GCNGC	2 cut(s)	225, 498
BlsI	GCNGC	2 cut(s)	226, 499
Bme1390I	CCNGG	4 cut(s)	89, 354, 372, 478
Bme18I	GGWCC	3 cut(s)	239, 276, 474
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	3 cut(s)	239, 276, 474
BmiI	GGNNCC	2 cut(s)	17, 310
BmrFI	CCNGG	4 cut(s)	89, 354, 372, 478
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	186, 376
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	2 cut(s)	48, 69
BsaJI	CCNNGG	4 cut(s)	87, 272, 331, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	4 cut(s)	89, 354, 372, 478
BseDI	CCNNGG	4 cut(s)	87, 272, 331, 477
BseGI	GGATG	3 cut(s)	97, 206, 216
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	39, 60
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	236, 509
BshNI	GGYRCC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	3 cut(s)	36, 94, 393
Bsp143I	GATC	3 cut(s)	79, 211, 468
Bsp19I	CCATGG	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	40, 61
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	17, 310
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	396
BsrGI	TGTACA	3 cut(s)	36, 94, 393
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	4 cut(s)	87, 272, 331, 477
BssMI	GATC	3 cut(s)	79, 211, 468
BssT1I	CCWWGG	2 cut(s)	272, 331
Bst2UI	CCWGG	4 cut(s)	89, 354, 372, 478
Bst4CI	ACNGT	2 cut(s)	286, 436
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstAUI	TGTACA	3 cut(s)	36, 94, 393
BstDEI	CTNAG	2 cut(s)	48, 69
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	97, 206, 216
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	3 cut(s)	82, 214, 471
BstMBI	GATC	3 cut(s)	79, 211, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 555
BstNI	CCWGG	4 cut(s)	89, 354, 372, 478
BstNSI	RCATGY	3 cut(s)	193, 259, 419
BstSCI	CCNGG	4 cut(s)	87, 352, 370, 476
BstSFI	CTRYAG	2 cut(s)	313, 495
BstV1I	GCAGC	2 cut(s)	236, 509
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	97, 206, 216
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	5 cut(s)	107, 167, 282, 398, 441
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	239, 276, 474
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	5 cut(s)	16, 37, 95, 375, 394
CviAII	CATG	6 cut(s)	143, 151, 190, 256, 273, 416
CviJI	RGCY	6 cut(s)	47, 53, 110, 205, 500, 544
CviKI_1	RGCY	6 cut(s)	47, 53, 110, 205, 500, 544
CviQI	GTAC	5 cut(s)	16, 37, 95, 375, 394
DdeI	CTNAG	2 cut(s)	48, 69
DpnI	GATC	3 cut(s)	81, 213, 470
DpnII	GATC	3 cut(s)	79, 211, 468
Eco130I	CCWWGG	2 cut(s)	272, 331
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	239, 276, 474
Eco57I	CTGAAG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	4 cut(s)	87, 352, 370, 476
EcoT14I	CCWWGG	2 cut(s)	272, 331
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	272, 331
FaeI	CATG	6 cut(s)	146, 154, 193, 259, 276, 419
FaiI	YATR	9 cut(s)	137, 144, 152, 191, 257, 274, 303, 326, 417
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	6 cut(s)	142, 150, 189, 255, 272, 415
Fnu4HI	GCNGC	2 cut(s)	225, 498
FokI	GGATG	3 cut(s)	104, 203, 213
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	225, 498
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	2 cut(s)	225, 498
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	146, 154, 193, 259, 276, 419
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	119, 290, 448
HphI	GGTGA	2 cut(s)	237, 337
Hpy166II	GTNNAC	4 cut(s)	187, 377, 396, 530
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	143, 209
Hpy8I	GTNNAC	4 cut(s)	187, 377, 396, 530
HpyAV	CCTTC	2 cut(s)	274, 289
HpyCH4III	ACNGT	2 cut(s)	286, 436
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	6 cut(s)	193, 368, 389, 410, 497, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 555
HpyF3I	CTNAG	2 cut(s)	48, 69
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	6 cut(s)	146, 154, 193, 259, 276, 419
HspAI	GCGC	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	79, 211, 468
Lsp1109I	GCAGC	2 cut(s)	236, 509
LweI	GCATC	2 cut(s)	186, 376
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	81, 213, 470
MboI	GATC	3 cut(s)	79, 211, 468
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	4 cut(s)	357, 462, 506, 561
MlyI	GAGTC	2 cut(s)	113, 442
MnlI	CCTC	4 cut(s)	43, 64, 67, 496
MseI	TTAA	1 cut(s)	565
MslI	CAYNNNNRTG	2 cut(s)	182, 194
MspR9I	CCNGG	4 cut(s)	89, 354, 372, 478
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	4 cut(s)	89, 354, 372, 478
MwoI	GCNNNNNNNGC	2 cut(s)	416, 555
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	79, 211, 468
NlaIII	CATG	6 cut(s)	146, 154, 193, 259, 276, 419
NlaIV	GGNNCC	2 cut(s)	17, 310
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	3 cut(s)	193, 259, 419
PaeR7I	CTCGAG	1 cut(s)	450
PagI	TCATGA	1 cut(s)	142
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	226, 499
PleI	GAGTC	2 cut(s)	113, 442
PpsI	GAGTC	2 cut(s)	113, 442
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	4 cut(s)	87, 352, 370, 476
PspGI	CCWGG	4 cut(s)	87, 352, 370, 476
PspN4I	GGNNCC	2 cut(s)	17, 310
PspPI	GGNCC	3 cut(s)	239, 276, 474
PspXI	VCTCGAGB	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	5 cut(s)	17, 38, 96, 376, 395
RsaNI	GTAC	5 cut(s)	16, 37, 95, 375, 394
RseI	CAYNNNNRTG	2 cut(s)	182, 194
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	2 cut(s)	225, 498
Sau3AI	GATC	3 cut(s)	79, 211, 468
Sau96I	GGNCC	3 cut(s)	239, 276, 474
SchI	GAGTC	2 cut(s)	113, 442
ScrFI	CCNGG	4 cut(s)	89, 354, 372, 478
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	8 cut(s)	17, 78, 281, 314, 345, 373, 488, 502
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	186, 376
SfcI	CTRYAG	2 cut(s)	313, 495
Sfr274I	CTCGAG	1 cut(s)	450
SinI	GGWCC	3 cut(s)	239, 276, 474
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	182, 194
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	357, 462, 506, 561
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	87, 352, 370, 476
StyI	CCWWGG	2 cut(s)	272, 331
TaaI	ACNGT	2 cut(s)	286, 436
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	4 cut(s)	210, 288, 451, 510
TasI	AATT	4 cut(s)	357, 462, 506, 561
TatI	WGTACW	3 cut(s)	36, 94, 393
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	5 cut(s)	107, 167, 289, 405, 441
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	224, 497
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	159, 167
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	5 cut(s)	107, 167, 289, 405, 441
VpaK11BI	GGWCC	3 cut(s)	239, 276, 474
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	3 cut(s)	193, 259, 419
XhoI	CTCGAG	1 cut(s)	450
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.