Rroxscaffold_5G00367930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002159
Physical Location & Seq
Reverse (-)
49750754 .. 49751638
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367930.1

Sequence Viewer

Length: 519 bp
ATGGTCTTTGCTTCGCCTCACCAATCCAAAACCCGACGTCTACACCGGTGCGTCAAAGCTCTACCTCTGAACCATGACCTTGGCCTCTCCACCACAAATCGACGGGAGAAGTCTTCCCCGCCTACTTTACCAAACCGAGAAGGCAACGCCAAGCGTCAACAGCAGCGGTCGAAGCCGCCGCCCTACTTCGCAAAAATGCAACATATAAAGAAAAGGAGAATGAAGGTGACGGCGGGGGCGGTTGGTTTCGCTCCGGAAGACGGAGTCCTTTGCGCCACCGTTAATGGGGTTGGACACCTTCGATGGAGAGACCCTTACCTGTTTCGGGGTGGGTTGGCTCGTGATGCAGCTCGTCCTTCATCTCTCGGGTGGTGGCGCGAGATGGTTGTGCGGCTGGACAGTGCGGTGGCGTCAATGAAGGGTCACGGCGGCAGCAACTGGCTTTTGAGCAAGCACTTGGAGCCCATTATTGAAGATGAGTTGTTGAACGAGCACATGGGCACTGTTGAAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.35

Weight (kDa)

10.31

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 40
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 9 cut(s) 119, 166, 176, 179, 233, 239, 391, 404, 429
AcyI GRCGYC 2 cut(s) 37, 410
AfiI CCNNNNNNNGG 3 cut(s) 260, 285, 325
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 3 cut(s) 473, 487, 509
AluBI AGCT 2 cut(s) 59, 350
AluI AGCT 2 cut(s) 59, 350
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 3 cut(s) 163, 347, 432
AsiGI ACCGGT 1 cut(s) 45
AspLEI GCGC 2 cut(s) 275, 378
AsuHPI GGTGA 2 cut(s) 11, 238
AvaI CYCGRG 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 465
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 105, 264
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 175, 359, 444
BccI CCATC 2 cut(s) 297, 376
BceAI ACGGC 2 cut(s) 246, 442
BcoDI GTCTC 1 cut(s) 303
BisI GCNGC 7 cut(s) 164, 176, 179, 348, 392, 430, 433
BlsI GCNGC 7 cut(s) 165, 177, 180, 349, 393, 431, 434
BmeT110I CYCGRG 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 462
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 2 cut(s) 105, 264
BsaHI GRCGYC 2 cut(s) 37, 410
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 2 cut(s) 45, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 285, 325
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 260, 285, 325
BseNI ACTGG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 3 cut(s) 175, 359, 444
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 84
BshTI ACCGGT 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 46, 254
BslI CCNNNNNNNGG 3 cut(s) 260, 285, 325
BsmAI GTCTC 1 cut(s) 303
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 465, 495, 503
Bsp13I TCCGGA 1 cut(s) 253
BspACI CCGC 9 cut(s) 119, 166, 176, 179, 233, 239, 391, 404, 429
BspANI GGCC 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 79
BssNI GRCGYC 2 cut(s) 37, 410
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 339
Bst4CI ACNGT 3 cut(s) 280, 401, 505
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 2 cut(s) 37, 410
BstC8I GCNNGC 1 cut(s) 452
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 2 cut(s) 275, 378
BstMAI GTCTC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 4 cut(s) 160, 172, 344, 460
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 175, 359, 444
BstV2I GAAGAC 2 cut(s) 105, 264
BstXI CCANNNNNNTGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 406, 501
Cac8I GCNNGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 438
CfoI GCGC 2 cut(s) 275, 378
Cfr10I RCCGGY 1 cut(s) 45
CseI GACGC 3 cut(s) 40, 143, 399
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 2 cut(s) 74, 496
CviJI RGCY 8 cut(s) 59, 84, 175, 338, 350, 394, 442, 463
CviKI_1 RGCY 8 cut(s) 59, 84, 175, 338, 350, 394, 442, 463
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 77, 499
FaiI YATR 4 cut(s) 75, 204, 206, 497
FatI CATG 2 cut(s) 73, 495
FauI CCCGC 2 cut(s) 126, 226
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 7 cut(s) 164, 176, 179, 348, 392, 430, 433
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 7 cut(s) 164, 176, 179, 348, 392, 430, 433
GlaI GCGC 2 cut(s) 274, 377
GluI GCNGC 7 cut(s) 164, 176, 179, 348, 392, 430, 433
HaeIII GGCC 1 cut(s) 84
HapII CCGG 2 cut(s) 46, 254
HgaI GACGC 3 cut(s) 40, 143, 399
HhaI GCGC 2 cut(s) 275, 378
Hin1I GRCGYC 2 cut(s) 37, 410
Hin1II CATG 2 cut(s) 77, 499
Hin6I GCGC 2 cut(s) 273, 376
HinP1I GCGC 2 cut(s) 273, 376
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 1 cut(s) 264
HpaII CCGG 2 cut(s) 46, 254
HphI GGTGA 2 cut(s) 11, 238
Hpy166II GTNNAC 2 cut(s) 41, 158
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 254, 341
Hpy8I GTNNAC 2 cut(s) 41, 158
Hpy99I CGWCG 2 cut(s) 39, 105
HpyAV CCTTC 5 cut(s) 134, 217, 308, 366, 412
HpyCH4III ACNGT 3 cut(s) 280, 401, 505
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 199, 347
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 172, 344, 460
HpySE526I ACGT 1 cut(s) 37
Hsp92I GRCGYC 2 cut(s) 37, 410
Hsp92II CATG 2 cut(s) 77, 499
HspAI GCGC 2 cut(s) 273, 376
Kpn2I TCCGGA 1 cut(s) 253
LmnI GCTCC 2 cut(s) 256, 460
LpnPI CCDG 5 cut(s) 59, 267, 332, 380, 424
Lsp1109I GCAGC 3 cut(s) 175, 359, 444
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 226, 422
MboII GAAGA 3 cut(s) 105, 269, 485
MhlI GDGCHC 3 cut(s) 465, 495, 503
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 4 cut(s) 27, 75, 95, 505
MroI TCCGGA 1 cut(s) 253
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 2 cut(s) 46, 254
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 160, 172, 344, 460
NlaIII CATG 2 cut(s) 77, 499
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 226, 422
PflFI GACNNNGTC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 7 cut(s) 165, 177, 180, 349, 393, 431, 434
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 7 cut(s) 164, 176, 179, 348, 392, 430, 433
SchI GAGTC 1 cut(s) 273
SduI GDGCHC 3 cut(s) 465, 495, 503
SetI ASST 9 cut(s) 40, 61, 67, 81, 228, 300, 321, 352, 516
SfaNI GCATC 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 45
SsiI CCGC 9 cut(s) 119, 166, 176, 179, 233, 239, 391, 404, 429
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 280, 401, 505
TaiI ACGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 100, 170, 301
TauI GCSGC 4 cut(s) 178, 181, 394, 432
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 406, 508
TseFI GTSAC 2 cut(s) 226, 422
TseI GCWGC 3 cut(s) 163, 347, 432
Tsp45I GTSAC 2 cut(s) 226, 422
TspDTI ATGAA 3 cut(s) 236, 348, 431
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 406, 508
Tth111I GACNNNGTC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 40
ZraI GACGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.