Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Forward (+)

6114061 .. 6114457

Gene Structure 397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29009

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGATTCTAGGTGTACAGAGAAACAATAACAGTACTGATTTTGAAAGCCTGGTTTGTGTCTGTGCTAAGGAGGTTGATGTCTCCCAAGATGTACAGCAGTGGGAGGCTCTGACTGACTCCAAGAAACACTTTATCAGTCATGTCCCGGCATTTTTGAGGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

55

Amino Acids

6.32

Weight (kDa)

6.01

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	22 - 53	1.8e-06	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	15, 34, 93
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	8
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	50, 146
BmrFI	CCNGG	2 cut(s)	50, 146
Bpu10I	CCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	128
Bsp1407I	TGTACA	2 cut(s)	13, 91
BsrGI	TGTACA	2 cut(s)	13, 91
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	32
BstAUI	TGTACA	2 cut(s)	13, 91
BstDEI	CTNAG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	48, 144
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	14, 33, 92
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	2 cut(s)	48, 107
CviKI_1	RGCY	2 cut(s)	48, 107
CviQI	GTAC	3 cut(s)	14, 33, 92
DdeI	CTNAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	139
FspBI	CTAG	1 cut(s)	8
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	2 cut(s)	4, 116
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	35, 62, 159
MaeI	CTAG	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	64, 97, 150
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	50, 146
MvaI	CCWGG	1 cut(s)	50
NciI	CCSGG	1 cut(s)	146
NlaIII	CATG	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	15, 34, 93
RsaNI	GTAC	3 cut(s)	14, 33, 92
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	50, 146
SetI	ASST	3 cut(s)	13, 75, 167
SgeI	CNNG	8 cut(s)	20, 61, 62, 98, 133, 152, 157, 158
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	48, 144
TaaI	ACNGT	1 cut(s)	32
TatI	WGTACW	3 cut(s)	13, 32, 91
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	104
TspRI	CASTG	1 cut(s)	104
XspI	CTAG	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.