Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Forward (+)

61760 .. 65295

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgcgtcgtcgcctcggctactctccactcggccattattacacgttacggctcccagcgtccagcactgaggaggttgatctctcccaggatgtacagctgtgggaggctctgattgactccaagaaacactttataagtcatgtcctggcatttctgaggcaaggtgaggccaaggttgctcgacctagttctgtacctcccgctgctctgaaggttggtggtggaatgatgaaacttggcccagtcaaaacaaagatgccttcagaactgagagctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

9.99

Isoelectric Point (pI)

79.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	233, 249
AfaI	GTAC	2 cut(s)	96, 198
AflIII	ACRYGT	1 cut(s)	42
AjnI	CCWGG	2 cut(s)	87, 147
AluBI	AGCT	2 cut(s)	100, 278
AluI	AGCT	2 cut(s)	100, 278
AoxI	GGCC	3 cut(s)	31, 171, 241
ApeKI	GCWGC	2 cut(s)	206, 278
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	193, 265
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	89, 149
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	207, 279
BlsI	GCNGC	2 cut(s)	208, 280
Bme1390I	CCNGG	2 cut(s)	89, 149
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	89, 149
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	13, 87, 174
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	89, 149
BseDI	CCNNGG	3 cut(s)	13, 87, 174
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	60, 149, 263
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	193, 265
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	3 cut(s)	33, 173, 243
BsnI	GGCC	3 cut(s)	33, 173, 243
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	3 cut(s)	33, 173, 243
BspCNI	CTCAG	3 cut(s)	61, 150, 264
BspLI	GGNNCC	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	13, 87, 174
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	89, 149
BstAUI	TGTACA	1 cut(s)	94
BstDEI	CTNAG	4 cut(s)	69, 158, 272, 282
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	89, 149
BstSCI	CCNGG	2 cut(s)	87, 147
BstV1I	GCAGC	2 cut(s)	193, 265
BsuRI	GGCC	3 cut(s)	33, 173, 243
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	95, 197
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	8 cut(s)	18, 33, 52, 100, 110, 173, 243, 278
CviKI_1	RGCY	8 cut(s)	18, 33, 52, 100, 110, 173, 243, 278
CviQI	GTAC	2 cut(s)	95, 197
DdeI	CTNAG	4 cut(s)	69, 158, 272, 282
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	233, 249
EcoRII	CCWGG	2 cut(s)	87, 147
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	137, 144
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	207, 279
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	207, 279
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	207, 279
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	33, 173, 243
HgaI	GACGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	114, 159, 213, 268
Hpy99I	CGWCG	2 cut(s)	9, 12
HpyAV	CCTTC	2 cut(s)	208, 273
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	4 cut(s)	69, 158, 272, 282
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	7 cut(s)	69, 74, 76, 101, 134, 161, 258
Lsp1109I	GCAGC	2 cut(s)	193, 265
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	23, 64, 67, 100, 153, 163, 210
MspA1I	CMGCKG	2 cut(s)	100, 206
MspR9I	CCNGG	2 cut(s)	89, 149
MvaI	CCWGG	2 cut(s)	89, 149
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	208, 280
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	87, 147
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	87, 147
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	96, 198
RsaNI	GTAC	2 cut(s)	95, 197
SatI	GCNGC	2 cut(s)	207, 279
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	89, 149
SetI	ASST	9 cut(s)	47, 78, 102, 169, 180, 190, 202, 219, 280
SfaNI	GCATC	1 cut(s)	249
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	87, 147
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	184
TatI	WGTACW	1 cut(s)	94
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	206, 278
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.