Rh1AG113700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
19606565 .. 19609276
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG113700.1

Sequence Viewer

Length: 300 bp
ATGGGCACTGTTGAACAGGTCAAGGATGGGGAGACGACCAGTGAGGGCAAGAGTACTAATGTTTTTGGTAGGCTGCCTAGCAGTGCTGCTGGTTGGACGACAAGTACAAGGAAAAGGAATGGCACAATTTGTTCCCCCACCAATAATGGCATTCCAGCCCCCATGAAATTGAAAATGGCTTGGTCTCAATGGTTGGCGGCATTATGTCGGTGTTTCATGAAACACACAAATGGTTTAAAATTTATTCTCAGTTTACATCAATTACGGAAAATATTTAAATTTTGGTTTCTCGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.14

Weight (kDa)

10.31

Isoelectric Point (pI)

22.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcsI RAATTY 2 cut(s) 239, 278
AfaI GTAC 2 cut(s) 55, 106
AgsI TTSAA 2 cut(s) 14, 172
Alw26I GTCTC 2 cut(s) 26, 189
ApeKI GCWGC 2 cut(s) 73, 86
ApoI RAATTY 2 cut(s) 239, 278
BaeGI GKGCMC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 60, 73
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 26, 189
BfaI CTAG 1 cut(s) 78
BisI GCNGC 3 cut(s) 74, 87, 198
BlsI GCNGC 3 cut(s) 75, 88, 199
BmcAI AGTACT 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 60, 73
BsmAI GTCTC 2 cut(s) 26, 189
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 26, 189
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 60, 73
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 6, 46, 88
CciI TCATGA 1 cut(s) 216
Csp6I GTAC 2 cut(s) 54, 105
CviAII CATG 2 cut(s) 163, 217
CviJI RGCY 3 cut(s) 73, 158, 179
CviKI_1 RGCY 3 cut(s) 73, 158, 179
CviQI GTAC 2 cut(s) 54, 105
DdeI CTNAG 1 cut(s) 248
DraI TTTAAA 2 cut(s) 237, 277
Eco31I GGTCTC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 166, 220
FaiI YATR 3 cut(s) 164, 205, 218
FatI CATG 2 cut(s) 162, 216
Fnu4HI GCNGC 3 cut(s) 74, 87, 198
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 74, 87, 198
FspBI CTAG 1 cut(s) 78
GluI GCNGC 3 cut(s) 74, 87, 198
Hin1II CATG 2 cut(s) 166, 220
Hpy166II GTNNAC 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 2 cut(s) 166, 220
LpnPI CCDG 4 cut(s) 2, 52, 75, 168
Lsp1109I GCAGC 2 cut(s) 60, 73
MaeI CTAG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 126, 167, 239, 260, 278
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 1 cut(s) 37
MseI TTAA 2 cut(s) 236, 276
MslI CAYNNNNRTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 150
NlaIII CATG 2 cut(s) 166, 220
PagI TCATGA 1 cut(s) 216
PctI GAATGC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 75, 88, 199
RsaI GTAC 2 cut(s) 55, 106
RsaNI GTAC 2 cut(s) 54, 105
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 236, 276
SatI GCNGC 3 cut(s) 74, 87, 198
ScaI AGTACT 1 cut(s) 55
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 21
SmiI ATTTAAAT 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 5 cut(s) 126, 167, 239, 260, 278
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 273
SspMI CTAG 1 cut(s) 78
SwaI ATTTAAAT 1 cut(s) 277
TaaI ACNGT 1 cut(s) 10
TasI AATT 5 cut(s) 126, 167, 239, 260, 278
TatI WGTACW 2 cut(s) 53, 104
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 236, 276
Tru9I TTAA 2 cut(s) 236, 276
TscAI CASTG 3 cut(s) 13, 46, 88
TseI GCWGC 2 cut(s) 73, 86
TspDTI ATGAA 3 cut(s) 179, 205, 233
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 3 cut(s) 13, 46, 88
XapI RAATTY 2 cut(s) 239, 278
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.