Rh3BG244200

Protein downstream neighbor of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002159
Physical Location & Seq
Forward (+)
23139330 .. 23140001
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG244200.1

Sequence Viewer

Length: 186 bp
ATGGCCAAGGTTGCTCGACCTGGTTCTCTACCTCCTGCTGCTCTCAAGGTTGGTGGCGGAGCGATGAAGGCCGGCCCAGTCAAAAGAAAGACGCCTTCAGAACTGAGAGAAGAGCAGTTGAAGCGGATGAATGCTGCAGAGATCATGGATGAGTCTCCAGCCCATTTGCTTGGTTCTGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.38

Weight (kDa)

10.11

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 124
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 3 cut(s) 3, 69, 73
ApeKI GCWGC 2 cut(s) 38, 134
AspS9I GGNCC 1 cut(s) 74
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 25, 121
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 39, 135
BlsI GCNGC 2 cut(s) 40, 136
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 132, 154
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 25, 121
BshFI GGCC 3 cut(s) 5, 71, 75
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 3 cut(s) 5, 71, 75
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 57, 124
BspANI GGCC 3 cut(s) 5, 71, 75
BspCNI CTCAG 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 132, 154
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 11, 68, 121
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 25, 121
BstXI CCANNNNNNTGG 1 cut(s) 170
BsuRI GGCC 3 cut(s) 5, 71, 75
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 132, 154
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 5, 71, 75, 161
CviKI_1 RGCY 4 cut(s) 5, 71, 75, 161
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 148
FaiI YATR 1 cut(s) 146
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 39, 135
FokI GGATG 2 cut(s) 139, 161
FseI GGCCGGCC 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 39, 135
GluI GCNGC 2 cut(s) 39, 135
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 3 cut(s) 5, 71, 75
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 1 cut(s) 148
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 61, 105
HpyCH4V TGCA 2 cut(s) 137, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 68, 121
HpyF3I CTNAG 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 148
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 141
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 6 cut(s) 6, 33, 48, 85, 90, 171
Lsp1109I GCAGC 2 cut(s) 25, 121
MabI ACCWGGT 1 cut(s) 19
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 11, 68, 121
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 40, 136
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 139
RigI GGCCGGCC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 39, 135
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 12, 22, 34, 51
SexAI ACCWGGT 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 57, 124
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 16
TseI GCWGC 2 cut(s) 38, 134
TspDTI ATGAA 2 cut(s) 80, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.