Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

33113033 .. 33118647

Gene Structure 5615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG182400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTACATTTATGCAGATTGCACATATCATGGGACAATTTCAATGGCTAACATGTACAAGAAAGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCTGCTGCTCTGAAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGGACTGAGAGAAACCATGGCATTCCATTGGTTGTTGTTGGGCATCATTTTGGACATGCAAGTGGGATCGCTTCTCGATCACAGCTGCTTAGGATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

7.82

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	22 - 59	1.6e-07	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AclWI	GGATC	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	230, 246
AfaI	GTAC	4 cut(s)	5, 56, 93, 195
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	42
AjnI	CCWGG	2 cut(s)	84, 144
AluBI	AGCT	2 cut(s)	65, 348
AluI	AGCT	2 cut(s)	65, 348
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	168, 238
ApeKI	GCWGC	2 cut(s)	203, 348
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	190, 335
BccI	CCATC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	86, 146
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	204, 349
BlsI	GCNGC	2 cut(s)	205, 350
Bme1390I	CCNGG	2 cut(s)	86, 146
BmgT120I	GGNCC	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	86, 146
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	246, 315
BmuI	ACTGGG	1 cut(s)	236
Bpu10I	CCTNAGC	2 cut(s)	66, 352
BsaJI	CCNNGG	3 cut(s)	84, 171, 279
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	86, 146
BseDI	CCNNGG	3 cut(s)	84, 171, 279
BseGI	GGATG	2 cut(s)	94, 362
BseMII	CTCAG	3 cut(s)	57, 146, 260
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	190, 335
BshFI	GGCC	2 cut(s)	170, 240
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	170, 240
Bsp1407I	TGTACA	3 cut(s)	3, 54, 91
Bsp143I	GATC	3 cut(s)	76, 329, 340
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	2 cut(s)	170, 240
BspCNI	CTCAG	3 cut(s)	58, 147, 261
BspPI	GGATC	1 cut(s)	337
BsrGI	TGTACA	3 cut(s)	3, 54, 91
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	84, 171, 279
BssMI	GATC	3 cut(s)	76, 329, 340
BssT1I	CCWWGG	2 cut(s)	171, 279
Bst2UI	CCWGG	2 cut(s)	86, 146
BstAUI	TGTACA	3 cut(s)	3, 54, 91
BstDEI	CTNAG	4 cut(s)	66, 155, 269, 352
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	94, 362
BstKTI	GATC	3 cut(s)	79, 332, 343
BstMBI	GATC	3 cut(s)	76, 329, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	86, 146
BstNSI	RCATGY	2 cut(s)	55, 322
BstSCI	CCNGG	2 cut(s)	84, 144
BstV1I	GCAGC	2 cut(s)	190, 335
BsuRI	GGCC	2 cut(s)	170, 240
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	94, 362
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	4 cut(s)	4, 55, 92, 194
CviAII	CATG	5 cut(s)	29, 52, 140, 280, 319
CviJI	RGCY	6 cut(s)	47, 65, 107, 170, 240, 348
CviKI_1	RGCY	6 cut(s)	47, 65, 107, 170, 240, 348
CviQI	GTAC	4 cut(s)	4, 55, 92, 194
DdeI	CTNAG	4 cut(s)	66, 155, 269, 352
DpnI	GATC	3 cut(s)	78, 331, 342
DpnII	GATC	3 cut(s)	76, 329, 340
Eco130I	CCWWGG	2 cut(s)	171, 279
Eco57I	CTGAAG	2 cut(s)	230, 246
EcoRII	CCWGG	2 cut(s)	84, 144
EcoT14I	CCWWGG	2 cut(s)	171, 279
ErhI	CCWWGG	2 cut(s)	171, 279
FaeI	CATG	5 cut(s)	32, 55, 143, 283, 322
FaiI	YATR	8 cut(s)	12, 25, 30, 53, 134, 141, 281, 320
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	5 cut(s)	28, 51, 139, 279, 318
Fnu4HI	GCNGC	2 cut(s)	204, 349
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	204, 349
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	204, 349
HaeIII	GGCC	2 cut(s)	170, 240
Hin1II	CATG	5 cut(s)	32, 55, 143, 283, 322
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	111, 156, 210
Hpy188III	TCNNGA	2 cut(s)	264, 338
HpyAV	CCTTC	2 cut(s)	205, 270
HpyCH4V	TGCA	3 cut(s)	14, 21, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	4 cut(s)	66, 155, 269, 352
Hsp92II	CATG	5 cut(s)	32, 55, 143, 283, 322
Kzo9I	GATC	3 cut(s)	76, 329, 340
LpnPI	CCDG	7 cut(s)	71, 98, 131, 158, 213, 249, 255
Lsp1109I	GCAGC	2 cut(s)	190, 335
LweI	GCATC	2 cut(s)	246, 315
MaeI	CTAG	1 cut(s)	186
MalI	GATC	3 cut(s)	78, 331, 342
MboI	GATC	3 cut(s)	76, 329, 340
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	61, 64, 97, 150, 160, 207
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	86, 146
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	2 cut(s)	86, 146
MwoI	GCNNNNNNNGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	76, 329, 340
NlaIII	CATG	5 cut(s)	32, 55, 143, 283, 322
NspI	RCATGY	2 cut(s)	55, 322
PciI	ACATGT	1 cut(s)	51
PctI	GAATGC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	205, 350
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PscI	ACATGT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	84, 144
PspGI	CCWGG	2 cut(s)	84, 144
PspPI	GGNCC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	348
RsaI	GTAC	4 cut(s)	5, 56, 93, 195
RsaNI	GTAC	4 cut(s)	4, 55, 92, 194
RseI	CAYNNNNRTG	1 cut(s)	323
SatI	GCNGC	2 cut(s)	204, 349
Sau3AI	GATC	3 cut(s)	76, 329, 340
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	86, 146
SetI	ASST	8 cut(s)	67, 75, 166, 177, 187, 199, 216, 350
SfaNI	GCATC	2 cut(s)	246, 315
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	84, 144
StyI	CCWWGG	2 cut(s)	171, 279
TaqI	TCGA	2 cut(s)	181, 339
TasI	AATT	1 cut(s)	36
TatI	WGTACW	3 cut(s)	3, 54, 91
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	2 cut(s)	203, 348
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	104
XceI	RCATGY	2 cut(s)	55, 322
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.