Rh3CG243500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
23312996 .. 23330528
17533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG243500.1

Sequence Viewer

Length: 273 bp
ATGTCCAGTACTAGGCGATTACTGTCGCATCAATATGAATTTCGATTGATTTGGAAATTGGCATCGTTTTGGTTAGCTTTTGCCTGCGGATTCCGAACTTCGCTCCCCAGAAGCAGGAGGTCCAAAACATCACAGTGCACTCCCACTGGTACTGCATTGCTCAGACTTGTTTGGTTTACAATAGCAATCCTAAGCTTGATGTCAACTATTCTGTTGACCATACCAGCATCAACAAAGGAAAAAGTACGTGAACCTAACAACAATGCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.28

Weight (kDa)

11.5

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 3 cut(s) 10, 151, 246
AfiI CCNNNNNNNGG 2 cut(s) 12, 114
AluBI AGCT 2 cut(s) 77, 195
AluI AGCT 2 cut(s) 77, 195
Alw21I GWGCWC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BfaI CTAG 1 cut(s) 12
BmcAI AGTACT 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmsI GCATC 3 cut(s) 37, 71, 236
Bpu10I CCTNAGC 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 114
Bse1I ACTGG 2 cut(s) 6, 151
Bse3DI GCAATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 12, 114
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 6, 151
BseSI GKGCMC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 12, 114
Bsp1286I GDGCHC 1 cut(s) 140
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 2 cut(s) 6, 151
Bst4CI ACNGT 2 cut(s) 24, 135
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 161, 191
BstSLI GKGCMC 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 140, 144
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 3 cut(s) 9, 150, 245
CviJI RGCY 2 cut(s) 77, 195
CviKI_1 RGCY 2 cut(s) 77, 195
CviQI GTAC 3 cut(s) 9, 150, 245
DdeI CTNAG 2 cut(s) 161, 191
Eco47I GGWCC 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 268
FaiI YATR 3 cut(s) 36, 221, 271
FspBI CTAG 1 cut(s) 12
HincII GTYRAC 2 cut(s) 204, 216
HindII GTYRAC 2 cut(s) 204, 216
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 1 cut(s) 90
Hpy166II GTNNAC 5 cut(s) 138, 177, 204, 216, 251
Hpy188I TCNGA 2 cut(s) 95, 164
Hpy8I GTNNAC 5 cut(s) 138, 177, 204, 216, 251
HpyCH4III ACNGT 2 cut(s) 24, 135
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 138, 155, 266
HpyF3I CTNAG 2 cut(s) 161, 191
HpySE526I ACGT 1 cut(s) 247
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 6 cut(s) 19, 97, 100, 121, 132, 237
LweI GCATC 3 cut(s) 37, 71, 236
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 2 cut(s) 38, 56
MnlI CCTC 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 268
MslI CAYNNNNRTG 2 cut(s) 33, 133
NsiI ATGCAT 1 cut(s) 268
PfeI GAWTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 248
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 3 cut(s) 10, 151, 246
RsaNI GTAC 3 cut(s) 9, 150, 245
RseI CAYNNNNRTG 2 cut(s) 33, 133
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 1 cut(s) 10
SduI GDGCHC 1 cut(s) 140
SetI ASST 5 cut(s) 79, 122, 197, 250, 256
SfaNI GCATC 3 cut(s) 37, 71, 236
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 33, 133
Sse9I AATT 2 cut(s) 38, 56
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 24, 135
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 38, 56
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 1 cut(s) 90
TscAI CASTG 2 cut(s) 140, 151
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 2 cut(s) 140, 151
VneI GTGCAC 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 38
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.