Rh6CG480800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002159
Physical Location & Seq
Forward (+)
64764425 .. 64764969
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG480800.1

Sequence Viewer

Length: 351 bp
ATGGTTAAGGAGGGGGATACAAGCAGCGAGGGCAAGAACACTAATGTTTTTGGTTGGACGACAACTGCAAGGGAAAGTAATGGCACAATTTGTTCTCCCAACTGTGATCCGGTCCCCAAGAAATTGAAAATCGATTGGTCTCAATGGTTGGCGGCATTATTTGGGTGTTTCATGAAAGGCACAAATGGTATAAAATTTCTTCTCAGTTTAAATCAACTATGGACAATATGTAAATTTCCTAATATTTTGAATTGGATTGATGGTTTGCATCTGGTATTGTCATGGCGATTTGACGGGTTTAATTCCAATGATGCGAATACATTGCCTGCAACGCCCCCGCGGGGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.95

Weight (kDa)

8.42

Isoelectric Point (pI)

22.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 340
AciI CCGC 3 cut(s) 152, 338, 340
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 194, 233
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 2 cut(s) 127, 250
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 2 cut(s) 194, 233
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 2 cut(s) 25, 153
BlsI GCNGC 2 cut(s) 26, 154
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmsI GCATC 2 cut(s) 277, 301
Bsa29I ATCGAT 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 3 cut(s) 152, 338, 340
BspCNI CTCAG 1 cut(s) 216
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 340
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 30, 331
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 112
Cfr42I CCGCGG 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 132
CviAII CATG 2 cut(s) 172, 282
CviJI RGCY 1 cut(s) 345
CviKI_1 RGCY 1 cut(s) 345
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraI TTTAAA 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 112
FaeI CATG 2 cut(s) 175, 285
FaiI YATR 5 cut(s) 173, 191, 220, 229, 283
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 171, 281
FauI CCCGC 2 cut(s) 333, 345
Fnu4HI GCNGC 2 cut(s) 25, 153
Fsp4HI GCNGC 2 cut(s) 25, 153
GluI GCNGC 2 cut(s) 25, 153
HapII CCGG 1 cut(s) 110
Hin1II CATG 2 cut(s) 175, 285
HpaII CCGG 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 68, 268, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 331
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 175, 285
KspI CCGCGG 1 cut(s) 341
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 3 cut(s) 123, 257, 339
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 2 cut(s) 277, 301
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 191
MluCI AATT 6 cut(s) 87, 122, 194, 233, 250, 301
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 4, 22
MseI TTAA 3 cut(s) 6, 209, 300
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 30, 331
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 175, 285
NlaIV GGNNCC 1 cut(s) 114
PagI TCATGA 1 cut(s) 171
PkrI GCNGC 2 cut(s) 26, 154
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
SacII CCGCGG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 6, 209, 300
SatI GCNGC 2 cut(s) 25, 153
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 112
SfaNI GCATC 2 cut(s) 277, 301
Sfr303I CCGCGG 1 cut(s) 341
SgrBI CCGCGG 1 cut(s) 341
SinI GGWCC 1 cut(s) 112
Sse9I AATT 6 cut(s) 87, 122, 194, 233, 250, 301
SsiI CCGC 3 cut(s) 152, 338, 340
SspI AATATT 1 cut(s) 244
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 132
TasI AATT 6 cut(s) 87, 122, 194, 233, 250, 301
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 6, 209, 300
Tru9I TTAA 3 cut(s) 6, 209, 300
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 2 cut(s) 160, 188
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 2 cut(s) 194, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.