zinc finger CCCH domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L37ae | PF01780 | 41 - 125 | 5.8e-39 | Ribosomal L37ae protein family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 155 |
| AccB1I | GGYRCC | 3 cut(s) | 155, 167, 311 |
| AciI | CCGC | 2 cut(s) | 67, 237 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfaI | GTAC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 363 |
| AgsI | TTSAA | 1 cut(s) | 325 |
| AluBI | AGCT | 1 cut(s) | 338 |
| AluI | AGCT | 1 cut(s) | 338 |
| ApeKI | GCWGC | 3 cut(s) | 63, 332, 335 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| Asp718I | GGTACC | 1 cut(s) | 155 |
| BanI | GGYRCC | 3 cut(s) | 155, 167, 311 |
| BbvCI | CCTCAGC | 1 cut(s) | 368 |
| BbvI | GCAGC | 3 cut(s) | 75, 319, 347 |
| BccI | CCATC | 2 cut(s) | 190, 365 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BisI | GCNGC | 5 cut(s) | 64, 67, 238, 333, 336 |
| BlsI | GCNGC | 5 cut(s) | 65, 68, 239, 334, 337 |
| BmiI | GGNNCC | 3 cut(s) | 157, 169, 313 |
| BmsI | GCATC | 2 cut(s) | 269, 279 |
| Bpu10I | CCTNAGC | 1 cut(s) | 368 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 363 |
| Bse1I | ACTGG | 1 cut(s) | 171 |
| BseGI | GGATG | 1 cut(s) | 284 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BseMII | CTCAG | 3 cut(s) | 61, 359, 372 |
| BseNI | ACTGG | 1 cut(s) | 171 |
| BseXI | GCAGC | 3 cut(s) | 75, 319, 347 |
| BshNI | GGYRCC | 3 cut(s) | 155, 167, 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BspACI | CCGC | 2 cut(s) | 67, 237 |
| BspCNI | CTCAG | 3 cut(s) | 60, 360, 373 |
| BspLI | GGNNCC | 3 cut(s) | 157, 169, 313 |
| BspMAI | CTGCAG | 1 cut(s) | 337 |
| BspT107I | GGYRCC | 3 cut(s) | 155, 167, 311 |
| BsrI | ACTGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 2 cut(s) | 290, 346 |
| Bst6I | CTCTTC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 1 cut(s) | 88 |
| BstDEI | CTNAG | 4 cut(s) | 47, 117, 368, 381 |
| BstF5I | GGATG | 1 cut(s) | 284 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 21, 311, 373 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 3 cut(s) | 75, 319, 347 |
| BtsCI | GGATG | 1 cut(s) | 284 |
| BtsI | GCAGTG | 1 cut(s) | 327 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| Cac8I | GCNNGC | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 271, 306 |
| CviAII | CATG | 1 cut(s) | 112 |
| CviJI | RGCY | 7 cut(s) | 66, 86, 134, 263, 305, 338, 367 |
| CviKI_1 | RGCY | 7 cut(s) | 66, 86, 134, 263, 305, 338, 367 |
| CviQI | GTAC | 1 cut(s) | 156 |
| DdeI | CTNAG | 4 cut(s) | 47, 117, 368, 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 248 |
| EarI | CTCTTC | 1 cut(s) | 248 |
| EcoRI | GAATTC | 1 cut(s) | 230 |
| FaeI | CATG | 1 cut(s) | 115 |
| FaiI | YATR | 6 cut(s) | 9, 113, 153, 165, 246, 318 |
| FatI | CATG | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 5 cut(s) | 64, 67, 238, 333, 336 |
| FokI | GGATG | 1 cut(s) | 291 |
| Fsp4HI | GCNGC | 5 cut(s) | 64, 67, 238, 333, 336 |
| GluI | GCNGC | 5 cut(s) | 64, 67, 238, 333, 336 |
| Hin1II | CATG | 1 cut(s) | 115 |
| HinfI | GANTC | 1 cut(s) | 138 |
| Hpy188I | TCNGA | 2 cut(s) | 50, 83 |
| Hpy188III | TCNNGA | 1 cut(s) | 361 |
| HpyAV | CCTTC | 4 cut(s) | 104, 124, 253, 295 |
| HpyCH4III | ACNGT | 2 cut(s) | 290, 346 |
| HpyCH4V | TGCA | 2 cut(s) | 282, 335 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 21, 311, 373 |
| HpyF3I | CTNAG | 4 cut(s) | 47, 117, 368, 381 |
| Hsp92II | CATG | 1 cut(s) | 115 |
| KpnI | GGTACC | 1 cut(s) | 159 |
| LmnI | GCTCC | 1 cut(s) | 373 |
| LpnPI | CCDG | 6 cut(s) | 100, 120, 184, 259, 291, 346 |
| Lsp1109I | GCAGC | 3 cut(s) | 75, 319, 347 |
| LweI | GCATC | 2 cut(s) | 269, 279 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MboII | GAAGA | 4 cut(s) | 29, 139, 205, 265 |
| MluCI | AATT | 1 cut(s) | 230 |
| MnlI | CCTC | 3 cut(s) | 249, 357, 363 |
| MseI | TTAA | 2 cut(s) | 189, 388 |
| MspA1I | CMGCKG | 1 cut(s) | 338 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 21, 311, 373 |
| NlaIII | CATG | 1 cut(s) | 115 |
| NlaIV | GGNNCC | 3 cut(s) | 157, 169, 313 |
| PfeI | GAWTC | 1 cut(s) | 138 |
| PkrI | GCNGC | 5 cut(s) | 65, 68, 239, 334, 337 |
| PspN4I | GGNNCC | 3 cut(s) | 157, 169, 313 |
| PstI | CTGCAG | 1 cut(s) | 337 |
| PvuII | CAGCTG | 1 cut(s) | 338 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| SaqAI | TTAA | 2 cut(s) | 189, 388 |
| SatI | GCNGC | 5 cut(s) | 64, 67, 238, 333, 336 |
| SetI | ASST | 2 cut(s) | 96, 340 |
| SfaNI | GCATC | 2 cut(s) | 269, 279 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| Sse9I | AATT | 1 cut(s) | 230 |
| SsiI | CCGC | 2 cut(s) | 67, 237 |
| TaaI | ACNGT | 2 cut(s) | 290, 346 |
| TasI | AATT | 1 cut(s) | 230 |
| TauI | GCSGC | 2 cut(s) | 69, 240 |
| TfiI | GAWTC | 1 cut(s) | 138 |
| Tru1I | TTAA | 2 cut(s) | 189, 388 |
| Tru9I | TTAA | 2 cut(s) | 189, 388 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseI | GCWGC | 3 cut(s) | 63, 332, 335 |
| TspRI | CASTG | 1 cut(s) | 334 |
| XapI | RAATTY | 1 cut(s) | 230 |