Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017837.1

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

5730 .. 7866

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017837.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggacttcgacgtccagctagaacccgaactcggttcctccactgactctgacctccacaacaagtatttgagcacctcgccgtctccatcgtcggcgtcgagccttctagaatcttcagagccgtatgtggatgagcttgccgctaaattgggttggaggagcttggctgaggaggttgatctctcccaggatgtacagcagtgggaggctctgactgactccaagaaacactttattagtcccggcatttttgaggcaaaggtaaagccaaggttgctcgacctggttctctacctcccgctgctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

4.36

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AatII	GACGTC	1 cut(s)	15
AciI	CCGC	2 cut(s)	144, 302
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	12, 98
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	189, 285
AluBI	AGCT	3 cut(s)	19, 139, 165
AluI	AGCT	3 cut(s)	19, 139, 165
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	2 cut(s)	67, 109
BciT130I	CCWGG	2 cut(s)	191, 287
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	2 cut(s)	20, 110
BisI	GCNGC	2 cut(s)	144, 305
BlsI	GCNGC	2 cut(s)	145, 306
Bme1390I	CCNGG	3 cut(s)	191, 246, 287
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	191, 246, 287
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	246
BsaHI	GRCGYC	2 cut(s)	12, 98
BsaJI	CCNNGG	2 cut(s)	189, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	191, 287
BseDI	CCNNGG	2 cut(s)	189, 272
BseGI	GGATG	2 cut(s)	139, 199
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	175, 188
BseXI	GCAGC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	144, 302
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	189, 272
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	2 cut(s)	12, 98
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	191, 287
BstACI	GRCGYC	2 cut(s)	12, 98
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	139, 199
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	191, 287
BstSCI	CCNGG	3 cut(s)	189, 244, 285
BstV1I	GCAGC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	139, 199
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	42, 209
Cac8I	GCNNGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	87
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	8 cut(s)	19, 105, 124, 139, 165, 170, 212, 271
CviKI_1	RGCY	8 cut(s)	19, 105, 124, 139, 165, 170, 212, 271
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	189, 285
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	90
FaiI	YATR	1 cut(s)	129
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	228
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	144, 305
FokI	GGATG	2 cut(s)	146, 206
Fsp4HI	GCNGC	2 cut(s)	144, 305
FspBI	CTAG	2 cut(s)	20, 110
GluI	GCNGC	2 cut(s)	144, 305
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	2 cut(s)	12, 98
HinfI	GANTC	3 cut(s)	47, 113, 221
HpaII	CCGG	1 cut(s)	246
Hpy188I	TCNGA	4 cut(s)	52, 121, 216, 311
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	3 cut(s)	14, 97, 103
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	2 cut(s)	12, 98
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	6 cut(s)	29, 176, 203, 259, 272, 299
Lsp1109I	GCAGC	1 cut(s)	291
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	2 cut(s)	20, 110
MaeII	ACGT	1 cut(s)	12
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	41, 215
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	49, 65, 88, 153, 166, 169, 202, 250, 308
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	3 cut(s)	191, 246, 287
MvaI	CCWGG	2 cut(s)	191, 287
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	145, 306
PleI	GAGTC	2 cut(s)	41, 215
PpsI	GAGTC	2 cut(s)	41, 215
Psp6I	CCWGG	2 cut(s)	189, 285
PspGI	CCWGG	2 cut(s)	189, 285
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SatI	GCNGC	2 cut(s)	144, 305
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	2 cut(s)	41, 215
ScrFI	CCNGG	3 cut(s)	191, 246, 287
SduI	GDGCHC	1 cut(s)	77
SexAI	ACCWGGT	1 cut(s)	285
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	144, 302
SspMI	CTAG	2 cut(s)	20, 110
StyD4I	CCNGG	3 cut(s)	189, 244, 285
StyI	CCWWGG	1 cut(s)	272
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	9, 101, 282
TasI	AATT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	49, 209
TseI	GCWGC	1 cut(s)	304
TspRI	CASTG	2 cut(s)	49, 209
XbaI	TCTAGA	1 cut(s)	109
XspI	CTAG	2 cut(s)	20, 110
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.