Rroxscaffold_2G00080390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002159
Physical Location & Seq
Reverse (-)
3328254 .. 3337520
9267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080390.1

Sequence Viewer

Length: 588 bp
ATGGTCGGCAAGCTCAAGCGACTCAAGGGAACATTCTTCTTTGCACACTCCGTGTTGATCGGCGTACACACCTACGCCTCGGAAGATCAACAGGCCTACCAACCTCTACCAACAGCTCGCGCCGGATCAACGTTGCTGGCGTCAGATCAAGCTCGTGGAGAATCAACAAGCACCAAACACACGTGCTTTGGTTCATCCCCTACCAAAGCTCAAGAACACTCATCACGTGACACCACTCATGGCCTAAATCCGATCAAGATTAAGCTTCTACGGCACTTGGTCAATCGTCTCCCTCAAAACGTCAACATAGCAAGAAGCTCACACTACAACCGTTCGATTCAAGATCAACCGAAGCCGGCGAATCAGAAGAAGCCCTTGATCTCGGACCAATTTAGACCCGATCCTTCAATGTCCAGTACTAGGCGGCCGTGGAAAACTGAAGTTATCTTGAAGAAAGTAGTCATTGCACTTGGCAAGAGTGTAGCTGGAAGTATCAAAGACCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTAGTGAAGAGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.81

Weight (kDa)

9.57

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 424
AclI AACGTT 1 cut(s) 131
AclWI GGATC 2 cut(s) 133, 395
AcoI YGGCCR 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 459
AcvI CACGTG 2 cut(s) 183, 227
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 2 cut(s) 66, 418
AfiI CCNNNNNNNGG 1 cut(s) 420
AflIII ACRYGT 2 cut(s) 180, 582
AgsI TTSAA 5 cut(s) 341, 408, 451, 539, 553
AhlI ACTAGT 1 cut(s) 569
AluBI AGCT 9 cut(s) 13, 116, 152, 209, 265, 318, 485, 505, 547
AluI AGCT 9 cut(s) 13, 116, 152, 209, 265, 318, 485, 505, 547
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 2 cut(s) 133, 395
AoxI GGCC 3 cut(s) 93, 241, 425
ApeKI GCWGC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 385
AvaII GGWCC 1 cut(s) 385
BauI CACGAG 1 cut(s) 153
BbrPI CACGTG 2 cut(s) 183, 227
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 529
BceAI ACGGC 2 cut(s) 287, 412
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 420, 570
BisI GCNGC 2 cut(s) 425, 518
BlsI GCNGC 2 cut(s) 426, 519
BmcAI AGTACT 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 8, 195
BsaAI YACGTR 2 cut(s) 183, 227
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 78, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 78, 428
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 557
BseX3I CGGCCG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 428
BshFI GGCC 3 cut(s) 95, 243, 427
BsiEI CGRYCG 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 2 cut(s) 123, 356
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 3 cut(s) 95, 243, 427
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
BspACI CCGC 1 cut(s) 424
BspANI GGCC 3 cut(s) 95, 243, 427
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 2 cut(s) 133, 395
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 78, 428
BssMI GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 2 cut(s) 534, 570
BstACI GRCGYC 1 cut(s) 140
BstBAI YACGTR 2 cut(s) 183, 227
BstC8I GCNNGC 5 cut(s) 11, 118, 138, 357, 515
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 8 cut(s) 60, 88, 128, 148, 255, 346, 381, 403
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
BstMCI CGRYCG 1 cut(s) 428
BstMWI GCNNNNNNNGC 2 cut(s) 271, 526
BstNSI RCATGY 1 cut(s) 586
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 529
BstZI CGGCCG 1 cut(s) 425
BsuRI GGCC 3 cut(s) 95, 243, 427
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 5 cut(s) 11, 118, 138, 357, 515
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 65, 417
CviAII CATG 3 cut(s) 239, 562, 583
CviQI GTAC 2 cut(s) 65, 417
DpnI GATC 8 cut(s) 59, 87, 127, 147, 254, 345, 380, 402
DpnII GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 425
EagI CGGCCG 1 cut(s) 425
Eam1104I CTCTTC 2 cut(s) 534, 570
EarI CTCTTC 2 cut(s) 534, 570
EclXI CGGCCG 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 459
Eco72I CACGTG 2 cut(s) 183, 227
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 3 cut(s) 242, 565, 586
FaiI YATR 4 cut(s) 240, 308, 563, 584
FalI AAGNNNNNCTT 8 cut(s) 359, 391, 489, 521, 506, 538, 531, 563
FatI CATG 3 cut(s) 238, 561, 582
Fnu4HI GCNGC 2 cut(s) 425, 518
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 425, 518
FspBI CTAG 2 cut(s) 420, 570
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 425, 518
HaeIII GGCC 3 cut(s) 95, 243, 427
HapII CCGG 2 cut(s) 123, 356
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 3 cut(s) 242, 565, 586
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 4 cut(s) 21, 161, 337, 361
HpaII CCGG 2 cut(s) 123, 356
Hpy166II GTNNAC 2 cut(s) 67, 304
Hpy188I TCNGA 5 cut(s) 82, 145, 252, 366, 385
Hpy188III TCNNGA 4 cut(s) 212, 256, 341, 448
Hpy8I GTNNAC 2 cut(s) 67, 304
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 4 cut(s) 131, 182, 226, 300
HpyCH4V TGCA 2 cut(s) 44, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 526
HpySE526I ACGT 4 cut(s) 131, 182, 226, 300
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 3 cut(s) 242, 565, 586
HspAI GCGC 1 cut(s) 120
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
LmnI GCTCC 2 cut(s) 526, 544
LpnPI CCDG 7 cut(s) 77, 122, 136, 369, 427, 471, 515
Lsp1109I GCAGC 1 cut(s) 529
MaeI CTAG 2 cut(s) 420, 570
MaeII ACGT 4 cut(s) 131, 182, 226, 300
MaeIII GTNAC 1 cut(s) 227
MalI GATC 8 cut(s) 59, 87, 127, 147, 254, 345, 380, 402
MboI GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
MboII GAAGA 6 cut(s) 28, 95, 379, 463, 551, 587
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 1 cut(s) 389
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 5 cut(s) 88, 114, 303, 535, 571
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 1 cut(s) 261
MspI CCGG 2 cut(s) 123, 356
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 271, 526
NaeI GCCGGC 1 cut(s) 357
NdeII GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 3 cut(s) 242, 565, 586
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 1 cut(s) 586
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 3 cut(s) 161, 337, 361
PkrI GCNGC 2 cut(s) 426, 519
PleI GAGTC 1 cut(s) 15
PmaCI CACGTG 2 cut(s) 183, 227
PmlI CACGTG 2 cut(s) 183, 227
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 2 cut(s) 183, 227
PscI ACATGT 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 131
PspCI CACGTG 2 cut(s) 183, 227
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 385
RsaI GTAC 2 cut(s) 66, 418
RsaNI GTAC 2 cut(s) 65, 417
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 425, 518
Sau3AI GATC 8 cut(s) 57, 85, 125, 145, 252, 343, 378, 400
Sau96I GGNCC 1 cut(s) 385
ScaI AGTACT 1 cut(s) 418
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 561
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 3 cut(s) 14, 23, 210
SmoI CTYRAG 3 cut(s) 14, 23, 210
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 424
SspMI CTAG 2 cut(s) 420, 570
StuI AGGCCT 1 cut(s) 95
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 4 cut(s) 134, 185, 229, 303
TaqI TCGA 1 cut(s) 335
TasI AATT 1 cut(s) 389
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 3 cut(s) 161, 337, 361
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 385
XceI RCATGY 1 cut(s) 586
XspI CTAG 2 cut(s) 420, 570
ZrmI AGTACT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.