Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Forward (+)

16254349 .. 16260704

Gene Structure 6356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCAAAGCCTATTTGCGAACGGACGTAATTGTGATGTATCAGAAAAGGCGGCATCTGTTATTAGTTTTACTGTCGTGTCAATGGAGAACTATCGTGATGGGATTGATATAGGAAATGATCTAGAGCTGAGTCTTCTAGCCATCCCGGTCAGCCAGCTTTTGAGCAAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

78

Amino Acids

8.7

Weight (kDa)

4.16

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	188, 202, 224
AluBI	AGCT	3 cut(s)	127, 157, 196
AluI	AGCT	3 cut(s)	127, 157, 196
Alw21I	GWGCWC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	2 cut(s)	92, 149
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	2 cut(s)	122, 137
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	118, 228
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	177
BssMI	GATC	2 cut(s)	118, 228
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	183, 219
BstC8I	GCNNGC	2 cut(s)	155, 167
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	121, 231
BstMBI	GATC	2 cut(s)	118, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	155, 167
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	9, 127, 140, 153, 157, 178, 196
CviKI_1	RGCY	7 cut(s)	9, 127, 140, 153, 157, 178, 196
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	120, 230
DpnII	GATC	2 cut(s)	118, 228
Eam1104I	CTCTTC	2 cut(s)	183, 219
EarI	CTCTTC	2 cut(s)	183, 219
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	110, 212
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	122, 137
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	95, 122
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	118, 228
LmnI	GCTCC	2 cut(s)	175, 193
LpnPI	CCDG	2 cut(s)	159, 167
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	122, 137
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	120, 230
MboI	GATC	2 cut(s)	118, 228
MboII	GAAGA	3 cut(s)	125, 200, 236
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	184
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	118, 228
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	177
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	118, 228
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	28, 129, 159, 198
SfaNI	GCATC	1 cut(s)	62
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	122, 137
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	28
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	121
XspI	CTAG	2 cut(s)	122, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.