Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

8181372 .. 8185977

Gene Structure 4606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG102400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGTCGTGACGCGAAAACTGCGTCGTGTTTTTTCAAGAATTCTCTGGCAATTTCAGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCTGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCCGCTGCTCTGAAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGAACTGAGAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

91

Amino Acids

9.8

Weight (kDa)

9.52

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	20 - 57	4e-07	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	224, 240
AfaI	GTAC	2 cut(s)	87, 189
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	78, 138
AluBI	AGCT	3 cut(s)	59, 91, 269
AluI	AGCT	3 cut(s)	59, 91, 269
AoxI	GGCC	2 cut(s)	162, 232
ApeKI	GCWGC	2 cut(s)	197, 269
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	184, 256
BciT130I	CCWGG	2 cut(s)	80, 140
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	198, 270
BlsI	GCNGC	2 cut(s)	199, 271
Bme1390I	CCNGG	2 cut(s)	80, 140
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	80, 140
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	78, 165
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	80, 140
BseDI	CCNNGG	2 cut(s)	78, 165
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	51, 140, 254
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	184, 256
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	164, 234
BsnI	GGCC	2 cut(s)	164, 234
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	164, 234
BspCNI	CTCAG	3 cut(s)	52, 141, 255
BspFNI	CGCG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	78, 165
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	80, 140
BstAUI	TGTACA	1 cut(s)	85
BstDEI	CTNAG	4 cut(s)	60, 149, 263, 273
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 56, 170
BstNI	CCWGG	2 cut(s)	80, 140
BstSCI	CCNGG	2 cut(s)	78, 138
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	184, 256
BsuRI	GGCC	2 cut(s)	164, 234
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	2 cut(s)	12, 20
Csp6I	GTAC	2 cut(s)	86, 188
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	59, 91, 101, 164, 234, 269
CviKI_1	RGCY	6 cut(s)	59, 91, 101, 164, 234, 269
CviQI	GTAC	2 cut(s)	86, 188
DdeI	CTNAG	4 cut(s)	60, 149, 263, 273
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	224, 240
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	78, 138
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	128, 135
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	198, 270
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	198, 270
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	198, 270
HaeIII	GGCC	2 cut(s)	164, 234
HgaI	GACGC	2 cut(s)	12, 20
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	105, 150, 204, 259
Hpy188III	TCNNGA	2 cut(s)	8, 37
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	199, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 56, 170
HpyF3I	CTNAG	4 cut(s)	60, 149, 263, 273
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	32, 65, 92, 125, 152, 249
Lsp1109I	GCAGC	2 cut(s)	184, 256
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MluCI	AATT	2 cut(s)	40, 51
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	55, 58, 91, 144, 154, 201
MspA1I	CMGCKG	3 cut(s)	59, 91, 197
MspR9I	CCNGG	2 cut(s)	80, 140
MvaI	CCWGG	2 cut(s)	80, 140
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	20, 56, 170
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	199, 271
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	78, 138
PspGI	CCWGG	2 cut(s)	78, 138
PspPI	GGNCC	1 cut(s)	233
PvuII	CAGCTG	2 cut(s)	59, 91
RsaI	GTAC	2 cut(s)	87, 189
RsaNI	GTAC	2 cut(s)	86, 188
SatI	GCNGC	2 cut(s)	198, 270
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	80, 140
SetI	ASST	9 cut(s)	61, 69, 93, 160, 171, 181, 193, 210, 271
SfaNI	GCATC	1 cut(s)	240
Sse9I	AATT	2 cut(s)	40, 51
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	78, 138
StyI	CCWWGG	1 cut(s)	165
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	40, 51
TatI	WGTACW	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	197, 269
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.