Rh5AG345500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002159
Physical Location & Seq
Forward (+)
56952233 .. 56962779
10547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG345500.1

Sequence Viewer

Length: 225 bp
ATGGACACTTGGACCCCGAAAACCTCACCTCACCACCAGAGAGCAATTTCGTCTATACGGCCGAAGCCGGCGAATCAGAAGAAGCCCTTGATCTCAGACCAATTTAGACCCGATCCTTCAATGTCCAGTACTAGGCGCCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.67

Weight (kDa)

6.04

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 135
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 120, 176, 190, 212
AluBI AGCT 2 cut(s) 142, 184
AluI AGCT 2 cut(s) 142, 184
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 1 cut(s) 107
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 18, 23
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 74
BfaI CTAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 139
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 3 cut(s) 14, 137, 165
BsaHI GRCGYC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 90, 112
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 14, 137, 165
BspPI GGATC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 2 cut(s) 90, 112
BssNI GRCGYC 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 171, 207
BstACI GRCGYC 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 69, 140, 152
BstDEI CTNAG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 93, 115
BstMBI GATC 2 cut(s) 90, 112
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 61
Cac8I GCNNGC 3 cut(s) 69, 140, 152
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 199, 220
CviJI RGCY 6 cut(s) 61, 67, 85, 142, 166, 184
CviKI_1 RGCY 6 cut(s) 61, 67, 85, 142, 166, 184
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 94
DinI GGCGCC 1 cut(s) 137
DpnI GATC 2 cut(s) 92, 114
DpnII GATC 2 cut(s) 90, 112
EaeI YGGCCR 1 cut(s) 59
EagI CGGCCG 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 171, 207
EarI CTCTTC 2 cut(s) 171, 207
EclXI CGGCCG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
FaeI CATG 2 cut(s) 202, 223
FaiI YATR 3 cut(s) 56, 200, 221
FalI AAGNNNNNCTT 6 cut(s) 71, 103, 143, 175, 168, 200
FatI CATG 2 cut(s) 198, 219
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 2 cut(s) 202, 223
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 1 cut(s) 73
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 18, 23
Hpy188I TCNGA 2 cut(s) 78, 97
HpyAV CCTTC 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 2 cut(s) 202, 223
HspAI GCGC 1 cut(s) 136
KasI GGCGCC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 90, 112
LmnI GCTCC 2 cut(s) 163, 181
LpnPI CCDG 4 cut(s) 50, 81, 139, 152
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 132
MalI GATC 2 cut(s) 92, 114
MboI GATC 2 cut(s) 90, 112
MboII GAAGA 3 cut(s) 91, 188, 224
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 2 cut(s) 45, 101
Mly113I GGCGCC 1 cut(s) 136
MnlI CCTC 4 cut(s) 34, 39, 172, 208
MroNI GCCGGC 1 cut(s) 67
MspI CCGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 163
NaeI GCCGGC 1 cut(s) 69
NarI GGCGCC 1 cut(s) 136
NdeII GATC 2 cut(s) 90, 112
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 202, 223
NlaIV GGNNCC 3 cut(s) 14, 137, 165
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 156
PluTI GGCGCC 1 cut(s) 139
PscI ACATGT 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 14, 137, 165
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 90, 112
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 130
SduI GDGCHC 1 cut(s) 198
SetI ASST 4 cut(s) 26, 31, 144, 186
SfoI GGCGCC 1 cut(s) 137
SinI GGWCC 1 cut(s) 12
Sse9I AATT 2 cut(s) 45, 101
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 1 cut(s) 132
TasI AATT 2 cut(s) 45, 101
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 1 cut(s) 73
TseI GCWGC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 12
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.