Rroxscaffold_7G00177030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002159
Physical Location & Seq
Reverse (-)
16590690 .. 16597506
6817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177030.1

Sequence Viewer

Length: 372 bp
ATGGGAAGAGATTGCCTGCGCAATAAAGCAGCCGGCATCGGAGCAATTAGTGATGATTGTCCTTCATCAGAACCAGAGGGGGACAGATTGTTGCCCATATGTGCGCTTAACTTACCGTTCACCATATATAAGCAAAATGGAAGTCGAAGATGGCAATTTGACCTATATATTAGGTGCTTTGCAGCCACTTTTGAGCAAGCAAAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGACATGCTGTTGCAGTTGTCATCGCTTATCAAGTTCCTCCCTTATGCTGCAGGCTTCAAAGATCTATTCCGAGGACATAAGGTCATAAAACCACGAGCAAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

5.62

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AgsI TTSAA 4 cut(s) 224, 238, 260, 322
AhdI GACNNNNNGTC 1 cut(s) 344
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 246
ApeKI GCWGC 3 cut(s) 29, 182, 311
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AspLEI GCGC 2 cut(s) 21, 106
AsuHPI GGTGA 1 cut(s) 112
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 41, 194, 298
BccI CCATC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 312
BglII AGATCT 1 cut(s) 325
BisI GCNGC 3 cut(s) 30, 183, 312
BlsI GCNGC 3 cut(s) 31, 184, 313
BmeRI GACNNNNNGTC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 3 cut(s) 41, 194, 298
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 1 cut(s) 325
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 219, 255
BstC8I GCNNGC 4 cut(s) 17, 34, 198, 316
BstHHI GCGC 2 cut(s) 21, 106
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 202, 211
BstNSI RCATGY 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 41, 194, 298
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 270
Cac8I GCNNGC 4 cut(s) 17, 34, 198, 316
CfoI GCGC 2 cut(s) 21, 106
Cfr10I RCCGGY 1 cut(s) 32
CviAII CATG 2 cut(s) 247, 268
CviJI RGCY 5 cut(s) 32, 185, 214, 232, 318
CviKI_1 RGCY 5 cut(s) 32, 185, 214, 232, 318
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
DriI GACNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 219, 255
Eam1105I GACNNNNNGTC 1 cut(s) 344
EarI CTCTTC 2 cut(s) 219, 255
FaeI CATG 2 cut(s) 250, 271
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 246, 267
FauNDI CATATG 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 30, 183, 312
Fsp4HI GCNGC 3 cut(s) 30, 183, 312
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 2 cut(s) 20, 105
GluI GCNGC 3 cut(s) 30, 183, 312
HapII CCGG 1 cut(s) 33
HhaI GCGC 2 cut(s) 21, 106
Hin1II CATG 2 cut(s) 250, 271
Hin6I GCGC 2 cut(s) 19, 104
HinP1I GCGC 2 cut(s) 19, 104
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 41, 70, 335
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 182, 277, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 211
Hsp92II CATG 2 cut(s) 250, 271
HspAI GCGC 2 cut(s) 19, 104
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 3 cut(s) 41, 211, 229
LpnPI CCDG 4 cut(s) 29, 46, 87, 300
Lsp1109I GCAGC 3 cut(s) 41, 194, 298
LweI GCATC 1 cut(s) 45
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 4 cut(s) 18, 159, 236, 272
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 45, 155
MnlI CCTC 5 cut(s) 70, 220, 256, 311, 329
MroNI GCCGGC 1 cut(s) 32
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 202, 211
NaeI GCCGGC 1 cut(s) 34
NdeI CATATG 1 cut(s) 98
NdeII GATC 1 cut(s) 325
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 250, 271
NlaIV GGNNCC 1 cut(s) 213
NsbI TGCGCA 1 cut(s) 20
NspI RCATGY 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 31, 184, 313
PspN4I GGNNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 325
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 3 cut(s) 30, 183, 312
Sau3AI GATC 1 cut(s) 325
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 165, 176, 234, 348
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 45, 155
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 45, 155
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 3 cut(s) 29, 182, 311
TspDTI ATGAA 1 cut(s) 54
XceI RCATGY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.