Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

5824547 .. 5861807

Gene Structure 37261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGCTCTGATCGGCGGCAGGTTTGGCTATGGCGGTTGATCGAGGGTGCAGACCAGGGGCTTCTCGGCTGCGGGGGTTGCGTCAGGGTTCTGTGCTTTTGTGTGGTGTCAGCGATAAGGAGGGGGCGGCCTGTGCGTTGTCTGAGTAGGGGTCTTTTGATCAAGGTCGGAGTACAGGCGTCCAGCACTGAGGAGGTTGATCTCTCCCAGGATGTACAGCTGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCCGCTGCTCTGAAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGAACTGAGAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

134

Amino Acids

14.54

Weight (kDa)

9.89

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	63 - 100	1.6e-06	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	10
AciI	CCGC	5 cut(s)	16, 34, 72, 127, 324
AcuI	CTGAAG	2 cut(s)	353, 369
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	3 cut(s)	174, 216, 318
AjnI	CCWGG	3 cut(s)	54, 207, 267
AluBI	AGCT	2 cut(s)	220, 398
AluI	AGCT	2 cut(s)	220, 398
AoxI	GGCC	3 cut(s)	128, 291, 361
ApeKI	GCWGC	3 cut(s)	69, 326, 398
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	56, 313, 385
BciT130I	CCWGG	3 cut(s)	56, 209, 269
BclI	TGATCA	1 cut(s)	159
BfaI	CTAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	5 cut(s)	17, 70, 128, 327, 399
BlsI	GCNGC	5 cut(s)	18, 71, 129, 328, 400
Bme1390I	CCNGG	3 cut(s)	56, 209, 269
BmgT120I	GGNCC	1 cut(s)	362
BmrFI	CCNGG	3 cut(s)	56, 209, 269
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	55, 207, 294
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	3 cut(s)	56, 209, 269
BseDI	CCNNGG	3 cut(s)	55, 207, 294
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	4 cut(s)	134, 180, 269, 383
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	56, 313, 385
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	130, 293, 363
BsnI	GGCC	3 cut(s)	130, 293, 363
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	10, 39, 159, 199
BspACI	CCGC	5 cut(s)	16, 34, 72, 127, 324
BspANI	GGCC	3 cut(s)	130, 293, 363
BspCNI	CTCAG	4 cut(s)	135, 181, 270, 384
BspMI	ACCTGC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	55, 207, 294
BssMI	GATC	4 cut(s)	10, 39, 159, 199
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	56, 209, 269
BstACI	GRCGYC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	214
BstDEI	CTNAG	5 cut(s)	143, 189, 278, 392, 402
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	13, 42, 162, 202
BstMBI	GATC	4 cut(s)	10, 39, 159, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 78, 133, 299
BstNI	CCWGG	3 cut(s)	56, 209, 269
BstSCI	CCNGG	3 cut(s)	54, 207, 267
BstV1I	GCAGC	3 cut(s)	56, 313, 385
BsuRI	GGCC	3 cut(s)	130, 293, 363
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	2 cut(s)	70, 168
Csp6I	GTAC	3 cut(s)	173, 215, 317
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	3 cut(s)	173, 215, 317
DdeI	CTNAG	5 cut(s)	143, 189, 278, 392, 402
DpnI	GATC	4 cut(s)	12, 41, 161, 201
DpnII	GATC	4 cut(s)	10, 39, 159, 199
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	2 cut(s)	353, 369
EcoRII	CCWGG	3 cut(s)	54, 207, 267
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	31, 257, 264
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	1 cut(s)	262
FauI	CCCGC	2 cut(s)	65, 331
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	5 cut(s)	17, 70, 128, 327, 399
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	17, 70, 128, 327, 399
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	5 cut(s)	17, 70, 128, 327, 399
HaeIII	GGCC	3 cut(s)	130, 293, 363
HgaI	GACGC	2 cut(s)	70, 168
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	7 cut(s)	10, 144, 170, 234, 279, 333, 388
HpyAV	CCTTC	2 cut(s)	328, 393
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 78, 133, 299
HpyF3I	CTNAG	5 cut(s)	143, 189, 278, 392, 402
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	10, 39, 159, 199
Lsp1109I	GCAGC	3 cut(s)	56, 313, 385
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	309
MalI	GATC	4 cut(s)	12, 41, 161, 201
MboI	GATC	4 cut(s)	10, 39, 159, 199
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	8 cut(s)	37, 114, 184, 187, 220, 273, 283, 330
MspA1I	CMGCKG	2 cut(s)	220, 326
MspR9I	CCNGG	3 cut(s)	56, 209, 269
MvaI	CCWGG	3 cut(s)	56, 209, 269
MwoI	GCNNNNNNNGC	4 cut(s)	25, 78, 133, 299
NdeII	GATC	4 cut(s)	10, 39, 159, 199
NlaIII	CATG	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	18, 71, 129, 328, 400
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	54, 207, 267
PspGI	CCWGG	3 cut(s)	54, 207, 267
PspPI	GGNCC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	3 cut(s)	174, 216, 318
RsaNI	GTAC	3 cut(s)	173, 215, 317
SatI	GCNGC	5 cut(s)	17, 70, 128, 327, 399
Sau3AI	GATC	4 cut(s)	10, 39, 159, 199
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	56, 209, 269
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	369
SsiI	CCGC	5 cut(s)	16, 34, 72, 127, 324
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	54, 207, 267
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	2 cut(s)	42, 304
TatI	WGTACW	2 cut(s)	172, 214
TauI	GCSGC	2 cut(s)	19, 130
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	69, 326, 398
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	193
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.