Rh1CG443800

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002159
Physical Location & Seq
Reverse (-)
69595590 .. 69600653
5064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG443800.1

Sequence Viewer

Length: 423 bp
ATGCTTTATGGCGTGTTCGCCTTGGAGCTCCAGTCCTTGAAGGACAATGATAATCGAGATTCAAGGGCTTGTTTAGTGAAAAAATTATTGAACCTACTTCAAGCCCTTCCTTTATACCTTGATGAAATCTTTCACCCTGTTGTTGCCGTTTTGCTGTCTGTAACATTTGTTCTAATCTTCAGAGTGGTGGATTCCGAACTTCGCTCCCCAGAAGCACGTTTTCTCTTGCCTTACTTTTTGAGGTCCAAAACATCACAGCGCACTCCCACTGGTACTGCATTGCTCAGACTTGTTTGGTTTGCAATAGCCATCCTAAGCTTGATGTCAACTATTCTCCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

140

Amino Acids

16.11

Weight (kDa)

5.14

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 7 cut(s) 40, 63, 91, 101, 374, 388, 410
AluBI AGCT 4 cut(s) 28, 318, 340, 382
AluI AGCT 4 cut(s) 28, 318, 340, 382
Alw21I GWGCWC 2 cut(s) 30, 396
ApeKI GCWGC 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 30, 396
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 14, 320
Bpu10I CCTNAGC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse1I ACTGG 2 cut(s) 31, 274
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 31, 274
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 30, 396
Bsp1286I GDGCHC 2 cut(s) 30, 396
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 2 cut(s) 31, 274
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 369, 405
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 284, 314
BstF5I GGATG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 397, 418
CviJI RGCY 8 cut(s) 28, 68, 104, 308, 318, 340, 364, 382
CviKI_1 RGCY 8 cut(s) 28, 68, 104, 308, 318, 340, 364, 382
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 284, 314
Eam1104I CTCTTC 2 cut(s) 369, 405
EarI CTCTTC 2 cut(s) 369, 405
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 400, 421
FaiI YATR 4 cut(s) 9, 115, 398, 419
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 366, 398
FatI CATG 2 cut(s) 396, 417
Fnu4HI GCNGC 1 cut(s) 353
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 353
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 353
GsuI CTGGAG 2 cut(s) 14, 320
HhaI GCGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 400, 421
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 2 cut(s) 59, 191
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 182, 196, 287
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 34, 116
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 278, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 284, 314
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 400, 421
HspAI GCGC 1 cut(s) 259
LmnI GCTCC 5 cut(s) 25, 33, 209, 361, 379
LpnPI CCDG 5 cut(s) 44, 150, 222, 255, 350
Lsp1109I GCAGC 1 cut(s) 364
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 3 cut(s) 169, 386, 422
MhlI GDGCHC 2 cut(s) 30, 396
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 234, 370, 406
MroXI GAANNNNTTC 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 400, 421
NlaIV GGNNCC 1 cut(s) 363
NspI RCATGY 1 cut(s) 421
PciI ACATGT 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 59, 191
PkrI GCNGC 1 cut(s) 354
PscI ACATGT 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 153, 185
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SacI GAGCTC 1 cut(s) 30
SatI GCNGC 1 cut(s) 353
Sau96I GGNCC 1 cut(s) 243
SduI GDGCHC 2 cut(s) 30, 396
SetI ASST 8 cut(s) 30, 96, 120, 220, 245, 320, 342, 384
SinI GGWCC 1 cut(s) 243
Sse9I AATT 1 cut(s) 83
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 55
TasI AATT 1 cut(s) 83
TfiI GAWTC 2 cut(s) 59, 191
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 243
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.