Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

21837882 .. 21849919

Gene Structure 12038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTGGTCTCTCTGCATACGCTTCCTCAATGAAGGGAGTAATTTAGATTCTTTGAATCTCAAACAATGCAAAGCCTATTTGCGAACGGACGGTCTTAGAATTTCAGGAACCCAATTGGTTTGTTTACAAAGAGTTGAAGAGCACCGGAGGTTAAGAGATGGAAATGGTGAAGCATTATATCCCAAACCTTCACTGTACATTAAATGTGATGCATCAGAAAATGCGGCATCTGTTATTAGTTTTACTGTAGTGTCAATGGAGAACTATCATGATGGGATTGATATAGGAAACGATCTAGAGCTGAGTTTTCTAGCCATCCCGGTCAGCCAGCTTTTGAGCAAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGATGAGATTGTGATAAAAATCTACAGGAAAAATTGCATGAACAATGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCTGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCCGCTGCTCTGAAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGAACTGAGAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

221

Amino Acids

24.78

Weight (kDa)

5.44

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	135 - 187	3e-07	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AciI	CCGC	2 cut(s)	224, 585
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	614, 630
AfaI	GTAC	3 cut(s)	197, 477, 579
AgsI	TTSAA	5 cut(s)	55, 137, 362, 376, 398
AjnI	CCWGG	2 cut(s)	468, 528
AluBI	AGCT	5 cut(s)	301, 331, 370, 481, 659
AluI	AGCT	5 cut(s)	301, 331, 370, 481, 659
Alw21I	GWGCWC	2 cut(s)	144, 384
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	552, 622
ApeKI	GCWGC	2 cut(s)	587, 659
ApoI	RAATTY	1 cut(s)	99
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	179, 560
Bbv12I	GWGCWC	2 cut(s)	144, 384
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	574, 646
BccI	CCATC	3 cut(s)	152, 266, 323
BciT130I	CCWGG	2 cut(s)	470, 530
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	3 cut(s)	296, 311, 570
BfmI	CTRYAG	2 cut(s)	246, 424
BisI	GCNGC	3 cut(s)	225, 588, 660
BlsI	GCNGC	3 cut(s)	226, 589, 661
Bme1390I	CCNGG	3 cut(s)	320, 470, 530
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	109, 351
BmrFI	CCNGG	3 cut(s)	320, 470, 530
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	4 cut(s)	199, 221, 236, 630
BmuI	ACTGGG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	468, 555
BsaWI	WCCGGW	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	2 cut(s)	470, 530
BseDI	CCNNGG	2 cut(s)	468, 555
BseGI	GGATG	3 cut(s)	315, 409, 478
BseJI	GATNNNNATC	1 cut(s)	419
BseMII	CTCAG	4 cut(s)	293, 441, 530, 644
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	2 cut(s)	380, 467
BseXI	GCAGC	2 cut(s)	574, 646
BshFI	GGCC	2 cut(s)	554, 624
BsiHKAI	GWGCWC	2 cut(s)	144, 384
BsiSI	CCGG	2 cut(s)	145, 320
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	554, 624
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	144, 384
Bsp1407I	TGTACA	2 cut(s)	195, 475
Bsp143I	GATC	2 cut(s)	292, 460
BspACI	CCGC	2 cut(s)	224, 585
BspANI	GGCC	2 cut(s)	554, 624
BspCNI	CTCAG	4 cut(s)	294, 442, 531, 645
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	109, 351
BspQI	GCTCTTC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	12
BsrGI	TGTACA	2 cut(s)	195, 475
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	2 cut(s)	468, 555
BssMI	GATC	2 cut(s)	292, 460
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	470, 530
Bst4CI	ACNGT	3 cut(s)	92, 195, 247
Bst6I	CTCTTC	3 cut(s)	132, 357, 393
BstAUI	TGTACA	2 cut(s)	195, 475
BstC8I	GCNNGC	2 cut(s)	329, 341
BstDEI	CTNAG	6 cut(s)	95, 302, 450, 539, 653, 663
BstF5I	GGATG	3 cut(s)	315, 409, 478
BstKTI	GATC	2 cut(s)	295, 463
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	292, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 560
BstNI	CCWGG	2 cut(s)	470, 530
BstSCI	CCNGG	3 cut(s)	318, 468, 528
BstSFI	CTRYAG	2 cut(s)	246, 424
BstV1I	GCAGC	2 cut(s)	574, 646
BsuRI	GGCC	2 cut(s)	554, 624
BtsCI	GGATG	3 cut(s)	315, 409, 478
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	329, 341
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	3 cut(s)	196, 476, 578
CviAII	CATG	4 cut(s)	269, 385, 439, 524
CviQI	GTAC	3 cut(s)	196, 476, 578
DdeI	CTNAG	6 cut(s)	95, 302, 450, 539, 653, 663
DpnI	GATC	2 cut(s)	294, 462
DpnII	GATC	2 cut(s)	292, 460
Eam1104I	CTCTTC	3 cut(s)	132, 357, 393
EarI	CTCTTC	3 cut(s)	132, 357, 393
Eco130I	CCWWGG	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	614, 630
EcoRII	CCWGG	2 cut(s)	468, 528
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	272, 388, 442, 527
FaiI	YATR	8 cut(s)	17, 178, 270, 284, 386, 440, 518, 525
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 497, 529
FatI	CATG	4 cut(s)	268, 384, 438, 523
FauI	CCCGC	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	225, 588, 660
FokI	GGATG	3 cut(s)	302, 416, 485
Fsp4HI	GCNGC	3 cut(s)	225, 588, 660
FspBI	CTAG	3 cut(s)	296, 311, 570
GluI	GCNGC	3 cut(s)	225, 588, 660
HaeIII	GGCC	2 cut(s)	554, 624
HapII	CCGG	2 cut(s)	145, 320
Hin1II	CATG	4 cut(s)	272, 388, 442, 527
HinfI	GANTC	3 cut(s)	47, 55, 500
HpaII	CCGG	2 cut(s)	145, 320
HphI	GGTGA	2 cut(s)	179, 560
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	5 cut(s)	217, 495, 540, 594, 649
Hpy188III	TCNNGA	3 cut(s)	105, 269, 296
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	26, 198, 589, 654
HpyCH4III	ACNGT	3 cut(s)	92, 195, 247
HpyCH4V	TGCA	4 cut(s)	15, 69, 212, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 560
HpyF3I	CTNAG	6 cut(s)	95, 302, 450, 539, 653, 663
Hsp92II	CATG	4 cut(s)	272, 388, 442, 527
Kzo9I	GATC	2 cut(s)	292, 460
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	349, 367
Lsp1109I	GCAGC	2 cut(s)	574, 646
LweI	GCATC	4 cut(s)	199, 221, 236, 630
MaeI	CTAG	3 cut(s)	296, 311, 570
MalI	GATC	2 cut(s)	294, 462
MboI	GATC	2 cut(s)	292, 460
MboII	GAAGA	3 cut(s)	149, 374, 410
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	144, 384
MluCI	AATT	4 cut(s)	40, 99, 113, 433
MlyI	GAGTC	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	2 cut(s)	152, 201
MspA1I	CMGCKG	2 cut(s)	481, 587
MspI	CCGG	2 cut(s)	145, 320
MspR9I	CCNGG	3 cut(s)	320, 470, 530
MunI	CAATTG	1 cut(s)	113
MvaI	CCWGG	2 cut(s)	470, 530
MwoI	GCNNNNNNNGC	2 cut(s)	349, 560
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	292, 460
NlaIII	CATG	4 cut(s)	272, 388, 442, 527
NlaIV	GGNNCC	2 cut(s)	109, 351
NsiI	ATGCAT	1 cut(s)	214
PagI	TCATGA	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	47, 55
PkrI	GCNGC	3 cut(s)	226, 589, 661
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	468, 528
PspGI	CCWGG	2 cut(s)	468, 528
PspN4I	GGNNCC	2 cut(s)	109, 351
PspPI	GGNCC	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	3 cut(s)	197, 477, 579
RsaNI	GTAC	3 cut(s)	196, 476, 578
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	152, 201
SatI	GCNGC	3 cut(s)	225, 588, 660
Sau3AI	GATC	2 cut(s)	292, 460
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	320, 470, 530
SduI	GDGCHC	2 cut(s)	144, 384
SfaNI	GCATC	4 cut(s)	199, 221, 236, 630
SfcI	CTRYAG	2 cut(s)	246, 424
Sse9I	AATT	4 cut(s)	40, 99, 113, 433
SsiI	CCGC	2 cut(s)	224, 585
SspMI	CTAG	3 cut(s)	296, 311, 570
StyD4I	CCNGG	3 cut(s)	318, 468, 528
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	92, 195, 247
TaqI	TCGA	1 cut(s)	565
TasI	AATT	4 cut(s)	40, 99, 113, 433
TatI	WGTACW	2 cut(s)	195, 475
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	47, 55
Tru1I	TTAA	2 cut(s)	152, 201
Tru9I	TTAA	2 cut(s)	152, 201
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	2 cut(s)	587, 659
TspDTI	ATGAA	3 cut(s)	45, 455, 629
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	99
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	3 cut(s)	296, 311, 570
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.