Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Forward (+)

80495848 .. 80498142

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCCAGTACTAGGAGAATTTGTGCAGGTGGATTCCGAACTTGGCTCCCCAGAAGCAGGAGGTCCAAAACATCACAGCGCACTCCTGTTGTTACTGCATTGCTCAGACTTGTTTGGTTTGCAATAGCGATCCTAAGCTTGATGTCAACTATTCTGCCGTGGAAAACTGAAGTTATCTTGAAGAAAGTAGTCATTGCACTTGGCAAGAGTGTAGCTGGAAGTATCAAAGATTCAGAGTTTGGCATAGAAATGGAGGTGTCAACAAGTGGTGACATCTATAGCTATGAAATCCTGCTATTTGAGATGCTGATAGGCAAGAGATTGATATATGACCCATCCCAGCTTTTGAGCAAGCAGCACTTGGAGCCTATTATTGATGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

16.04

Weight (kDa)

6.13

Isoelectric Point (pI)

66.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	12, 57
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	181, 391, 413
AluBI	AGCT	5 cut(s)	138, 215, 282, 343, 385
AluI	AGCT	5 cut(s)	138, 215, 282, 343, 385
Alw21I	GWGCWC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	47, 366
BmsI	GCATC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 57
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	98, 192
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	12, 57
BseMI	GCAATG	2 cut(s)	98, 192
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	12, 57
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	47, 366
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	124
BsrDI	GCAATG	2 cut(s)	98, 192
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	104, 134
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	400, 421
CviJI	RGCY	7 cut(s)	46, 138, 215, 282, 343, 367, 385
CviKI_1	RGCY	7 cut(s)	46, 138, 215, 282, 343, 367, 385
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	104, 134
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	189
FaeI	CATG	2 cut(s)	403, 424
FaiI	YATR	7 cut(s)	245, 279, 285, 328, 330, 401, 422
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	2 cut(s)	399, 420
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	403, 424
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	2 cut(s)	147, 261
HindII	GTYRAC	2 cut(s)	147, 261
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	2 cut(s)	33, 230
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	147, 261
Hpy188I	TCNGA	3 cut(s)	38, 107, 235
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	147, 261
HpyCH4V	TGCA	4 cut(s)	26, 98, 122, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	104, 134
Hsp92II	CATG	2 cut(s)	403, 424
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	51, 364, 382
LpnPI	CCDG	8 cut(s)	12, 19, 43, 64, 99, 201, 305, 353
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	91, 269
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	193, 425
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	3 cut(s)	54, 247, 373
MslI	CAYNNNNRTG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	403, 424
NlaIV	GGNNCC	2 cut(s)	47, 366
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	17
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	33, 230
PkrI	GCNGC	1 cut(s)	357
PscI	ACATGT	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	47, 366
PspPI	GGNCC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	248
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	8 cut(s)	31, 65, 140, 217, 258, 284, 345, 387
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	1 cut(s)	12
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	33, 230
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.