Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000982.1

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

222318 .. 225369

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000982.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggccggaaaattttgccggaggtcgccggaaaagtggtggtcggacggtggtcgccggtggccggagctgagctggtggtggctgcaggcggaagtggcagagccttgcagggcttgtgcggagctgctgcagggctgttgcaaggctgctgcgcggctcctgcaggtgctaggcaggggctgtcggcagctgtcgatggcgtgcaggggatctgtcgacaggtgtgcgcgggggctcggcaggtgtgtgcggggctgtcggcagatgtcggcagttctcggcaggaagcgtgcagggctctcggcagatgcttgcagggctgtcgacagaggctcggcagcactcggcagatctcggcaggggcgtgcaggggcctcggtaggggcaggtccgatttttcagacggccggttcaggggctttccggccggttccggtggttccgccgccggttctgggttccttaaggctagggcttcaatatgtggggcggtggatgttggaatttgagggctacgaaattaggttttcagggttagaatttcgtgctgataacgcgtccagcactgaggaggttgatctctcccaggatgtacagctgtgggaggctctgattgactccaagaaacactttataagtcatgtcctggcatttctgaggcaaggtgaggccaaggttgctcgacctagttctgtacctcccgctgctctgaaggttggtggtggaatgatgaaacttggcccagtcaaaacaaagatgccttcagaactgagagctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

261

Amino Acids

28.29

Weight (kDa)

10.02

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AarI	CACCTGC	2 cut(s)	157, 234
Acc36I	ACCTGC	3 cut(s)	157, 234, 380
AccI	GTMKAC	2 cut(s)	219, 327
AccII	CGCG	3 cut(s)	157, 232, 560
AciI	CCGC	9 cut(s)	92, 122, 157, 232, 253, 446, 449, 493, 705
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	4 cut(s)	3, 62, 408, 428
AcsI	RAATTY	3 cut(s)	11, 506, 542
AcuI	CTGAAG	2 cut(s)	734, 750
AfaI	GTAC	2 cut(s)	597, 699
AfiI	CCNNNNNNNGG	4 cut(s)	64, 384, 417, 458
AflII	CTTAAG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	2 cut(s)	588, 648
AluBI	AGCT	6 cut(s)	70, 75, 127, 193, 601, 779
AluI	AGCT	6 cut(s)	70, 75, 127, 193, 601, 779
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	7 cut(s)	3, 62, 375, 408, 428, 672, 742
ApeKI	GCWGC	9 cut(s)	85, 127, 130, 149, 152, 190, 341, 707, 779
ApoI	RAATTY	3 cut(s)	11, 506, 542
AspLEI	GCGC	2 cut(s)	157, 232
AspS9I	GGNCC	3 cut(s)	375, 392, 743
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	240, 303
BbvI	GCAGC	9 cut(s)	72, 114, 117, 136, 139, 202, 353, 694, 766
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	8 cut(s)	209, 243, 285, 307, 319, 341, 360, 394
BciT130I	CCWGG	2 cut(s)	590, 650
BfaI	CTAG	3 cut(s)	173, 473, 690
BfmI	CTRYAG	3 cut(s)	86, 131, 164
BfrI	CTTAAG	1 cut(s)	466
BfuAI	ACCTGC	3 cut(s)	157, 234, 380
BglII	AGATCT	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	590, 650
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	375, 392, 743
BmiI	GGNNCC	5 cut(s)	161, 376, 435, 444, 463
BmrFI	CCNGG	2 cut(s)	590, 650
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	301, 750
BmuI	ACTGGG	1 cut(s)	740
BoxI	GACNNNNGTC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	378, 588, 675
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 384, 417, 458
Bse118I	RCCGGY	4 cut(s)	57, 410, 430, 451
Bse1I	ACTGG	1 cut(s)	746
BseBI	CCWGG	2 cut(s)	590, 650
BseDI	CCNNGG	3 cut(s)	378, 588, 675
BseGI	GGATG	2 cut(s)	504, 598
BseLI	CCNNNNNNNGG	4 cut(s)	64, 384, 417, 458
BseMII	CTCAG	4 cut(s)	62, 561, 650, 764
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	587
BseX3I	CGGCCG	2 cut(s)	408, 428
BseXI	GCAGC	9 cut(s)	72, 114, 117, 136, 139, 202, 353, 694, 766
BsgI	GTGCAG	3 cut(s)	226, 315, 390
Bsh1236I	CGCG	3 cut(s)	157, 232, 560
Bsh1285I	CGRYCG	2 cut(s)	411, 431
BshFI	GGCC	7 cut(s)	5, 64, 377, 410, 430, 674, 744
BsiEI	CGRYCG	2 cut(s)	411, 431
BslI	CCNNNNNNNGG	4 cut(s)	64, 384, 417, 458
BsnI	GGCC	7 cut(s)	5, 64, 377, 410, 430, 674, 744
Bsp1286I	GDGCHC	2 cut(s)	240, 303
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	212, 353, 580
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	9 cut(s)	92, 122, 157, 232, 253, 446, 449, 493, 705
BspANI	GGCC	7 cut(s)	5, 64, 377, 410, 430, 674, 744
BspCNI	CTCAG	4 cut(s)	63, 562, 651, 765
BspFNI	CGCG	3 cut(s)	157, 232, 560
BspLI	GGNNCC	5 cut(s)	161, 376, 435, 444, 463
BspMAI	CTGCAG	3 cut(s)	90, 135, 168
BspMI	ACCTGC	3 cut(s)	157, 234, 380
BspPI	GGATC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	466
BsrFI	RCCGGY	4 cut(s)	57, 410, 430, 451
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	4 cut(s)	57, 410, 430, 451
BssECI	CCNNGG	3 cut(s)	378, 588, 675
BssMI	GATC	3 cut(s)	212, 353, 580
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	590, 650
Bst4CI	ACNGT	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	595
BstC8I	GCNNGC	5 cut(s)	90, 205, 294, 316, 369
BstDEI	CTNAG	5 cut(s)	71, 570, 659, 773, 783
BstF5I	GGATG	2 cut(s)	504, 598
BstFNI	CGCG	3 cut(s)	157, 232, 560
BstHHI	GCGC	2 cut(s)	157, 232
BstKTI	GATC	3 cut(s)	215, 356, 583
BstMBI	GATC	3 cut(s)	212, 353, 580
BstMCI	CGRYCG	2 cut(s)	411, 431
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 163, 298, 320, 557, 680
BstNI	CCWGG	2 cut(s)	590, 650
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	588, 648
BstSFI	CTRYAG	3 cut(s)	86, 131, 164
BstUI	CGCG	3 cut(s)	157, 232, 560
BstV1I	GCAGC	9 cut(s)	72, 114, 117, 136, 139, 202, 353, 694, 766
BstX2I	RGATCY	2 cut(s)	212, 353
BstYI	RGATCY	2 cut(s)	212, 353
BstZI	CGGCCG	2 cut(s)	408, 428
BsuRI	GGCC	7 cut(s)	5, 64, 377, 410, 430, 674, 744
BtsCI	GGATG	2 cut(s)	504, 598
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	3 cut(s)	157, 234, 380
Cac8I	GCNNGC	5 cut(s)	90, 205, 294, 316, 369
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	2 cut(s)	157, 232
Cfr10I	RCCGGY	4 cut(s)	57, 410, 430, 451
Cfr13I	GGNCC	3 cut(s)	375, 392, 743
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	596, 698
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	2 cut(s)	596, 698
DdeI	CTNAG	5 cut(s)	71, 570, 659, 773, 783
DpnI	GATC	3 cut(s)	214, 355, 582
DpnII	GATC	3 cut(s)	212, 353, 580
EaeI	YGGCCR	4 cut(s)	3, 62, 408, 428
EagI	CGGCCG	2 cut(s)	408, 428
EciI	GGCGGA	2 cut(s)	107, 435
EclXI	CGGCCG	2 cut(s)	408, 428
Eco130I	CCWWGG	1 cut(s)	675
Eco24I	GRGCYC	2 cut(s)	240, 303
Eco47I	GGWCC	1 cut(s)	392
Eco52I	CGGCCG	2 cut(s)	408, 428
Eco57I	CTGAAG	2 cut(s)	734, 750
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	588, 648
EcoT14I	CCWWGG	1 cut(s)	675
EcoT38I	GRGCYC	2 cut(s)	240, 303
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	1 cut(s)	647
FaiI	YATR	3 cut(s)	486, 638, 645
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	1 cut(s)	643
FauI	CCCGC	3 cut(s)	225, 246, 712
FblI	GTMKAC	2 cut(s)	219, 327
FokI	GGATG	2 cut(s)	511, 605
FriOI	GRGCYC	2 cut(s)	240, 303
FspBI	CTAG	3 cut(s)	173, 473, 690
GlaI	GCGC	2 cut(s)	156, 231
HaeIII	GGCC	7 cut(s)	5, 64, 377, 410, 430, 674, 744
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	2 cut(s)	157, 232
Hin1II	CATG	1 cut(s)	647
Hin6I	GCGC	2 cut(s)	155, 230
HinP1I	GCGC	2 cut(s)	155, 230
HincII	GTYRAC	2 cut(s)	220, 328
HindII	GTYRAC	2 cut(s)	220, 328
HinfI	GANTC	1 cut(s)	620
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	220, 328
Hpy188I	TCNGA	7 cut(s)	46, 396, 405, 615, 660, 714, 769
Hpy8I	GTNNAC	2 cut(s)	220, 328
HpyAV	CCTTC	2 cut(s)	709, 774
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	9 cut(s)	88, 111, 133, 144, 166, 207, 296, 318, 371
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 163, 298, 320, 557, 680
HpyF3I	CTNAG	5 cut(s)	71, 570, 659, 773, 783
Hsp92II	CATG	1 cut(s)	647
HspAI	GCGC	2 cut(s)	155, 230
Kzo9I	GATC	3 cut(s)	212, 353, 580
LmnI	GCTCC	3 cut(s)	67, 124, 165
Lsp1109I	GCAGC	9 cut(s)	72, 114, 117, 136, 139, 202, 353, 694, 766
LweI	GCATC	2 cut(s)	301, 750
MaeI	CTAG	3 cut(s)	173, 473, 690
MalI	GATC	3 cut(s)	214, 355, 582
MboI	GATC	3 cut(s)	212, 353, 580
MflI	RGATCY	2 cut(s)	212, 353
MhlI	GDGCHC	2 cut(s)	240, 303
MluCI	AATT	4 cut(s)	11, 506, 522, 542
MluI	ACGCGT	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	2 cut(s)	24, 483
MseI	TTAA	1 cut(s)	467
MspA1I	CMGCKG	3 cut(s)	193, 601, 707
MspCI	CTTAAG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	590, 650
MvaI	CCWGG	2 cut(s)	590, 650
MvnI	CGCG	3 cut(s)	157, 232, 560
MwoI	GCNNNNNNNGC	6 cut(s)	98, 163, 298, 320, 557, 680
NdeII	GATC	3 cut(s)	212, 353, 580
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	5 cut(s)	161, 376, 435, 444, 463
NmeAIII	GCCGAG	6 cut(s)	219, 261, 284, 317, 327, 337
PaqCI	CACCTGC	2 cut(s)	157, 234
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
PshAI	GACNNNNGTC	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	588, 648
PspGI	CCWGG	2 cut(s)	588, 648
PspN4I	GGNNCC	5 cut(s)	161, 376, 435, 444, 463
PspPI	GGNCC	3 cut(s)	375, 392, 743
PstI	CTGCAG	3 cut(s)	90, 135, 168
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	212, 353
PvuII	CAGCTG	2 cut(s)	193, 601
RsaI	GTAC	2 cut(s)	597, 699
RsaNI	GTAC	2 cut(s)	596, 698
SalI	GTCGAC	2 cut(s)	218, 326
SaqAI	TTAA	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	212, 353, 580
Sau96I	GGNCC	3 cut(s)	375, 392, 743
SbfI	CCTGCAGG	1 cut(s)	168
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	2 cut(s)	590, 650
SdaI	CCTGCAGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	240, 303
SfaNI	GCATC	2 cut(s)	301, 750
SfcI	CTRYAG	3 cut(s)	86, 131, 164
SgrAI	CRCCGGYG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse8387I	CCTGCAGG	1 cut(s)	168
Sse9I	AATT	4 cut(s)	11, 506, 522, 542
SsiI	CCGC	9 cut(s)	92, 122, 157, 232, 253, 446, 449, 493, 705
SspMI	CTAG	3 cut(s)	173, 473, 690
StyD4I	CCNGG	2 cut(s)	588, 648
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	4 cut(s)	197, 219, 327, 685
TasI	AATT	4 cut(s)	11, 506, 522, 542
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	2 cut(s)	160, 451
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	9 cut(s)	85, 127, 130, 149, 152, 190, 341, 707, 779
TspDTI	ATGAA	1 cut(s)	749
TspRI	CASTG	1 cut(s)	574
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	11, 506, 542
XmiI	GTMKAC	2 cut(s)	219, 327
XspI	CTAG	3 cut(s)	173, 473, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.