Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

7959533 .. 7960790

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTAAGGAGGGGGATACAAGCAGCGAGGGCAAGAACACTAATGTTTTTGGTTGGACGACAACTGCAAGGGAAAGTAATGGCACAATTTGTTCTCCCAACTGTGATCCGGTCCCCAAGAAATTGAAAATCGATTGGTCTCAATGGTTGGCGGCATTATTTGGGTGTTTCATGAAAGGCACAAATGCTCTATTGGTTTCAATTATCAAAGGCCTCATGAGATCAATCCTTGGAATAGTTGGAATTTGCCTCTCATCTTCGTTCTCAACCTCACCATCTTCAACCTCATCACAAGAATGCATTGAAGACCCCTCAGAATCATTCAAGCTCCATCTTCTTCCTCAGGCAGTTACATTGAGAAGATTCAAAGCTGCATCCCAGCCATTCGGTTGGTGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.41

Weight (kDa)

8.59

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	243
AgsI	TTSAA	6 cut(s)	127, 201, 282, 305, 325, 367
AluBI	AGCT	2 cut(s)	328, 371
AluI	AGCT	2 cut(s)	328, 371
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	24, 371
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	36, 358
BccI	CCATC	2 cut(s)	283, 339
BciVI	GTATCC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	25, 153, 372
BlsI	GCNGC	3 cut(s)	26, 154, 373
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	327, 356
BseXI	GCAGC	2 cut(s)	36, 358
BseYI	CCCAGC	1 cut(s)	378
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	106, 221
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	326, 355
BspDI	ATCGAT	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	171, 216
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	106, 221
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	313, 342
BstF5I	GGATG	1 cut(s)	374
BstKTI	GATC	2 cut(s)	109, 224
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	106, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	36, 358
BstV2I	GAAGAC	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	374
CciI	TCATGA	2 cut(s)	171, 216
Cfr13I	GGNCC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	132
CviAII	CATG	2 cut(s)	172, 217
CviJI	RGCY	4 cut(s)	213, 328, 371, 382
CviKI_1	RGCY	4 cut(s)	213, 328, 371, 382
DdeI	CTNAG	2 cut(s)	313, 342
DpnI	GATC	2 cut(s)	108, 223
DpnII	GATC	2 cut(s)	106, 221
Eco130I	CCWWGG	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	175, 220
FaiI	YATR	2 cut(s)	173, 218
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	171, 216
Fnu4HI	GCNGC	3 cut(s)	25, 153, 372
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	3 cut(s)	25, 153, 372
GluI	GCNGC	3 cut(s)	25, 153, 372
GsaI	CCCAGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	2 cut(s)	175, 220
HinfI	GANTC	2 cut(s)	317, 363
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	172, 217
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	68, 300, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	313, 342
Hsp92II	CATG	2 cut(s)	175, 220
Kzo9I	GATC	2 cut(s)	106, 221
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	3 cut(s)	123, 329, 392
Lsp1109I	GCAGC	2 cut(s)	36, 358
LweI	GCATC	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	108, 223
MboI	GATC	2 cut(s)	106, 221
MboII	GAAGA	6 cut(s)	249, 270, 317, 326, 329, 372
MluCI	AATT	4 cut(s)	87, 122, 201, 243
MmeI	TCCRAC	2 cut(s)	35, 220
MnlI	CCTC	8 cut(s)	4, 22, 224, 260, 280, 295, 322, 351
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	295
MspI	CCGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	2 cut(s)	106, 221
NlaIII	CATG	2 cut(s)	175, 220
NlaIV	GGNNCC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	302
PagI	TCATGA	2 cut(s)	171, 216
PceI	AGGCCT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	317, 363
PkrI	GCNGC	3 cut(s)	26, 154, 373
PspFI	CCCAGC	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	3 cut(s)	25, 153, 372
Sau3AI	GATC	2 cut(s)	106, 221
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	4 cut(s)	272, 287, 330, 373
SfaNI	GCATC	1 cut(s)	383
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	87, 122, 201, 243
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	87, 122, 201, 243
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	317, 363
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	2 cut(s)	24, 371
TspDTI	ATGAA	2 cut(s)	160, 188
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.