Rh2BG384700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002159
Physical Location & Seq
Forward (+)
54559964 .. 54570560
10597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG384700.1

Sequence Viewer

Length: 492 bp
ATGTTTGCTGAGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAAGCCCCCACTCAGAGATCTGCAATCACTCCTTATAGAATTGTTCTTGCCGAAGCCGGCGAATCAGAAGAAGCCCTTGATCTCAGACCAATTTAGACCCGATCCTTCAATGTCCAGTACTACGCGGAGGTCCAAAACATCACAGCGCACTCCCACTGGTACTGCATTGCTCAGACTTTGTTTGGTTTGCAATAGCGATCCTAAGCTTGATGTCAACTATTCTCCAGCTTTTGAGCAACAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACAATATTGAAGAGTTAAGAGGAGTCATGGAAAGAACAGGTTCAAAATCACGATCAATTACTTTTTCAAATCCGGCAGCACCTGCACGAGCCCTTCCCGCATGCCATAAATGCCCCACAAATAGAAGAATCCTAGAACAAAACGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

7.69

Isoelectric Point (pI)

85.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AccII CGCG 1 cut(s) 178
AciI CCGC 2 cut(s) 178, 438
AclWI GGATC 2 cut(s) 149, 245
AfaI GTAC 2 cut(s) 172, 214
AgsI TTSAA 6 cut(s) 162, 314, 328, 350, 384, 408
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 4 cut(s) 43, 259, 281, 322
AluI AGCT 4 cut(s) 43, 259, 281, 322
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 2 cut(s) 149, 245
AlwNI CAGNNNCTG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 27, 183
AvaII GGWCC 2 cut(s) 27, 183
BanII GRGCYC 1 cut(s) 433
BauI CACGAG 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 17
BfaI CTAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 430
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 2 cut(s) 27, 183
BmgT120I GGNCC 2 cut(s) 27, 183
BmiI GGNNCC 2 cut(s) 51, 303
BmrFI CCNGG 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 30, 168, 214
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 79, 150, 238
BseNI ACTGG 3 cut(s) 30, 168, 214
BseRI GAGGAG 2 cut(s) 332, 375
BseXI GCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 110, 413
Bsp1286I GDGCHC 2 cut(s) 336, 433
Bsp143I GATC 5 cut(s) 70, 132, 154, 250, 392
BspACI CCGC 2 cut(s) 178, 438
BspCNI CTCAG 3 cut(s) 78, 149, 237
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 51, 303
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 2 cut(s) 149, 245
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 3 cut(s) 30, 168, 214
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 5 cut(s) 70, 132, 154, 250, 392
BssSI CACGAG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 309, 345
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 111, 442
BstDEI CTNAG 5 cut(s) 9, 65, 136, 224, 255
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 73, 135, 157, 253, 395
BstMBI GATC 5 cut(s) 70, 132, 154, 250, 392
BstMWI GCNNNNNNNGC 5 cut(s) 49, 301, 422, 437, 450
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 2 cut(s) 111, 442
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 27, 183
Csp6I GTAC 2 cut(s) 171, 213
CviAII CATG 3 cut(s) 337, 367, 441
CviQI GTAC 2 cut(s) 171, 213
DdeI CTNAG 5 cut(s) 9, 65, 136, 224, 255
DpnI GATC 5 cut(s) 72, 134, 156, 252, 394
DpnII GATC 5 cut(s) 70, 132, 154, 250, 392
Eam1104I CTCTTC 2 cut(s) 309, 345
EarI CTCTTC 2 cut(s) 309, 345
Eco24I GRGCYC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 27, 183
EcoRII CCWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 3 cut(s) 340, 370, 444
FaiI YATR 5 cut(s) 89, 338, 368, 442, 447
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 306, 338
FatI CATG 3 cut(s) 336, 366, 440
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 2 cut(s) 110, 413
HhaI GCGC 1 cut(s) 201
Hin1II CATG 3 cut(s) 340, 370, 444
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 41, 257
HinfI GANTC 4 cut(s) 11, 115, 363, 468
HpaII CCGG 2 cut(s) 110, 413
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 68, 120, 139, 227
Hpy188III TCNNGA 2 cut(s) 37, 390
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 18, 168, 443
HpyCH4V TGCA 4 cut(s) 76, 218, 243, 425
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 301, 422, 437, 450
HpyF3I CTNAG 5 cut(s) 9, 65, 136, 224, 255
Hsp92II CATG 3 cut(s) 340, 370, 444
HspAI GCGC 1 cut(s) 199
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Kzo9I GATC 5 cut(s) 70, 132, 154, 250, 392
LmnI GCTCC 3 cut(s) 49, 301, 319
Lsp1109I GCAGC 1 cut(s) 428
MaeI CTAG 1 cut(s) 473
MalI GATC 5 cut(s) 72, 134, 156, 252, 394
MboI GATC 5 cut(s) 70, 132, 154, 250, 392
MboII GAAGA 4 cut(s) 133, 326, 362, 477
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 336, 433
MluCI AATT 3 cut(s) 92, 143, 396
MlyI GAGTC 2 cut(s) 20, 372
MnlI CCTC 4 cut(s) 174, 310, 353, 478
MroNI GCCGGC 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 1 cut(s) 356
MspI CCGG 2 cut(s) 110, 413
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 5 cut(s) 49, 301, 422, 437, 450
NaeI GCCGGC 1 cut(s) 111
NdeII GATC 5 cut(s) 70, 132, 154, 250, 392
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 3 cut(s) 340, 370, 444
NlaIV GGNNCC 2 cut(s) 51, 303
NspI RCATGY 1 cut(s) 444
PaeI GCATGC 1 cut(s) 444
PaqCI CACCTGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 115, 468
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 2 cut(s) 19, 371
PpsI GAGTC 2 cut(s) 19, 371
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 51, 303
PspPI GGNCC 2 cut(s) 27, 183
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 172, 214
RsaNI GTAC 2 cut(s) 171, 213
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 5 cut(s) 70, 132, 154, 250, 392
Sau96I GGNCC 2 cut(s) 27, 183
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 2 cut(s) 20, 372
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 336, 433
SetI ASST 9 cut(s) 21, 29, 45, 185, 261, 283, 324, 382, 424
SinI GGWCC 2 cut(s) 27, 183
SphI GCATGC 1 cut(s) 444
Sse9I AATT 3 cut(s) 92, 143, 396
SsiI CCGC 2 cut(s) 178, 438
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 15
TasI AATT 3 cut(s) 92, 143, 396
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 2 cut(s) 115, 468
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 416
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 27, 183
XceI RCATGY 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.