Rroxscaffold_6G00404660

Protein downstream neighbor of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002159
Physical Location & Seq
Reverse (-)
27129464 .. 27129850
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404660.1

Sequence Viewer

Length: 171 bp
ATGGCCAAGGTTGCTCGACCTGGTTCTCTACCTCCCGCTGCTCTCAAGGTTGGTGGCGGAGCGATGAAGGCTGGCCCAGTCAAGAGAAAGACGCCTTCAGAACTGAGAACGGTTTTAGTGGATCTCCCATCCCAGGACTCCAAATTAATTGGAATGGGCACTGGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

5.67

Weight (kDa)

10.28

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 57
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 2 cut(s) 19, 132
AlwI GGATC 1 cut(s) 129
AoxI GGCC 2 cut(s) 3, 73
ApeKI GCWGC 1 cut(s) 38
AseI ATTAAT 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 21, 134
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 21, 134
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 21, 134
BmrI ACTGGG 2 cut(s) 71, 171
BmuI ACTGGG 2 cut(s) 71, 171
BpuEI CTTGAG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 6, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 77, 166
BseBI CCWGG 2 cut(s) 21, 134
BseDI CCNNGG 2 cut(s) 6, 132
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 77, 166
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 5, 75
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 2 cut(s) 5, 75
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 2 cut(s) 36, 57
BspANI GGCC 2 cut(s) 5, 75
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 77, 166
BssECI CCNNGG 2 cut(s) 6, 132
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 21, 134
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 11, 68
BstNI CCWGG 2 cut(s) 21, 134
BstSCI CCNGG 2 cut(s) 19, 132
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 2 cut(s) 5, 75
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviJI RGCY 3 cut(s) 5, 71, 75
CviKI_1 RGCY 3 cut(s) 5, 71, 75
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 19, 132
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 5, 75
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 92
HinfI GANTC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 61, 105
HpyCH4III ACNGT 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 68
HpyF3I CTNAG 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 6, 33, 57, 90, 119, 146, 147
Lsp1109I GCAGC 1 cut(s) 25
MabI ACCWGGT 1 cut(s) 19
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 161
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 143, 147
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 21, 134
MvaI CCWGG 2 cut(s) 21, 134
MwoI GCNNNNNNNGC 2 cut(s) 11, 68
NdeII GATC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 19, 132
PspGI CCWGG 2 cut(s) 19, 132
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 121
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 21, 134
SduI GDGCHC 1 cut(s) 161
SetI ASST 4 cut(s) 12, 22, 34, 51
SexAI ACCWGGT 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 143, 147
SsiI CCGC 2 cut(s) 36, 57
StyD4I CCNGG 2 cut(s) 19, 132
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 143, 147
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 166
VspI ATTAAT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.