Rw4G029140

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
55848465 .. 55849472
1008 bp
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UTR
Exon/CDS
Intron
Rw4G029140.1

Sequence Viewer

Length: 357 bp
ATGCTTTTGAGCAAGCACTTGGAGCACATTATTGAAGATGAGCTTTTGAACGAGCACATGGGCACTGTTGAACAGGTCAAGGATGGGGAGACGACCAGTGAGGGCAAGAGTACTAATGTTTTTGGTAGGCTGCCTAGCAGTGCTGCTGGTTGGACGACAAGTACAAGGAAAAGGAATGGCACAATTTGTTCCCCCACCAATAATGGCATTCCAGCCCCCATGAAATTGAAAATGGCTTGGTCTCAATGGTTGGCGGCATTATGTCGGTGTTTCATGAAACACACAAATGGTTTAAAATTTATTCTCAGTTTACATCAATTACGGAAAATATTTAAATTTTGGTTTCTCGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

9.55

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AcsI RAATTY 2 cut(s) 296, 335
AfaI GTAC 2 cut(s) 112, 163
AgsI TTSAA 4 cut(s) 35, 49, 71, 229
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 2 cut(s) 27, 57
Alw26I GTCTC 2 cut(s) 83, 246
ApeKI GCWGC 2 cut(s) 130, 143
ApoI RAATTY 2 cut(s) 296, 335
BaeGI GKGCMC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 27, 57
BbvI GCAGC 2 cut(s) 117, 130
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 83, 246
BfaI CTAG 1 cut(s) 135
BisI GCNGC 3 cut(s) 131, 144, 255
BlsI GCNGC 3 cut(s) 132, 145, 256
BmcAI AGTACT 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 117, 130
BsiHKAI GWGCWC 2 cut(s) 27, 57
BsmAI GTCTC 2 cut(s) 83, 246
BsmBI CGTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 3 cut(s) 27, 57, 65
BspACI CCGC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 83, 246
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 117, 130
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 63, 103, 145
Cac8I GCNNGC 1 cut(s) 14
CciI TCATGA 1 cut(s) 273
Csp6I GTAC 2 cut(s) 111, 162
CviAII CATG 3 cut(s) 58, 220, 274
CviJI RGCY 4 cut(s) 43, 130, 215, 236
CviKI_1 RGCY 4 cut(s) 43, 130, 215, 236
CviQI GTAC 2 cut(s) 111, 162
DdeI CTNAG 1 cut(s) 305
DraI TTTAAA 2 cut(s) 294, 334
Eco31I GGTCTC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 61, 223, 277
FaiI YATR 4 cut(s) 59, 221, 262, 275
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 3 cut(s) 57, 219, 273
Fnu4HI GCNGC 3 cut(s) 131, 144, 255
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 131, 144, 255
FspBI CTAG 1 cut(s) 135
GluI GCNGC 3 cut(s) 131, 144, 255
Hin1II CATG 3 cut(s) 61, 223, 277
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 3 cut(s) 61, 223, 277
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 59, 109, 132, 225
Lsp1109I GCAGC 2 cut(s) 117, 130
MaeI CTAG 1 cut(s) 135
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 3 cut(s) 27, 57, 65
MluCI AATT 5 cut(s) 183, 224, 296, 317, 335
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 1 cut(s) 94
MseI TTAA 2 cut(s) 293, 333
MslI CAYNNNNRTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 61, 223, 277
PagI TCATGA 1 cut(s) 273
PctI GAATGC 1 cut(s) 207
PkrI GCNGC 3 cut(s) 132, 145, 256
RsaI GTAC 2 cut(s) 112, 163
RsaNI GTAC 2 cut(s) 111, 162
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 293, 333
SatI GCNGC 3 cut(s) 131, 144, 255
ScaI AGTACT 1 cut(s) 112
SduI GDGCHC 3 cut(s) 27, 57, 65
SetI ASST 2 cut(s) 45, 78
SmiI ATTTAAAT 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 5 cut(s) 183, 224, 296, 317, 335
SsiI CCGC 1 cut(s) 254
SspI AATATT 1 cut(s) 330
SspMI CTAG 1 cut(s) 135
SwaI ATTTAAAT 1 cut(s) 334
TaaI ACNGT 1 cut(s) 67
TasI AATT 5 cut(s) 183, 224, 296, 317, 335
TatI WGTACW 2 cut(s) 110, 161
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 293, 333
Tru9I TTAA 2 cut(s) 293, 333
TscAI CASTG 3 cut(s) 70, 103, 145
TseI GCWGC 2 cut(s) 130, 143
TspDTI ATGAA 3 cut(s) 236, 262, 290
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 3 cut(s) 70, 103, 145
XapI RAATTY 2 cut(s) 296, 335
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.