Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

179326 .. 181561

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgggttcttccctgtttaatttcattcatctcccttcaagcactacgggatcaaccatacctatcaatctggcgtccagcactgaggaggttgatctctcccaggatgtacagctgtgggaggctctgattgactccaagaaacactttataagtcatgtcctggcatttctgaggcaaggtgaggccaaggttgctcgacctagttctgtacctcccgctgctctgaaggttggtggtggaatgatgaaacttggcccagtcaaaacaaagatgccttcagaactgagagctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

99

Amino Acids

10.56

Weight (kDa)

9.22

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	248, 264
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	111, 213
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	102, 162
AluBI	AGCT	2 cut(s)	115, 293
AluI	AGCT	2 cut(s)	115, 293
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	186, 256
ApeKI	GCWGC	2 cut(s)	221, 293
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	208, 280
BciT130I	CCWGG	2 cut(s)	104, 164
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	222, 294
BlsI	GCNGC	2 cut(s)	223, 295
Bme1390I	CCNGG	2 cut(s)	104, 164
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	104, 164
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	102, 189
Bse1I	ACTGG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	104, 164
BseDI	CCNNGG	2 cut(s)	102, 189
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	75, 164, 278
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	208, 280
BshFI	GGCC	2 cut(s)	188, 258
BsnI	GGCC	2 cut(s)	188, 258
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	50, 94
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	188, 258
BspCNI	CTCAG	3 cut(s)	76, 165, 279
BspPI	GGATC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	102, 189
BssMI	GATC	2 cut(s)	50, 94
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	104, 164
BstACI	GRCGYC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	84, 173, 287, 297
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	53, 97
BstMBI	GATC	2 cut(s)	50, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	104, 164
BstSCI	CCNGG	2 cut(s)	102, 162
BstV1I	GCAGC	2 cut(s)	208, 280
BsuRI	GGCC	2 cut(s)	188, 258
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	110, 212
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	5 cut(s)	115, 125, 188, 258, 293
CviKI_1	RGCY	5 cut(s)	115, 125, 188, 258, 293
CviQI	GTAC	2 cut(s)	110, 212
DdeI	CTNAG	4 cut(s)	84, 173, 287, 297
DpnI	GATC	2 cut(s)	52, 96
DpnII	GATC	2 cut(s)	50, 94
Eco130I	CCWWGG	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	248, 264
EcoRII	CCWGG	2 cut(s)	102, 162
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	161
FaiI	YATR	3 cut(s)	59, 152, 159
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	222, 294
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	222, 294
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	222, 294
HaeIII	GGCC	2 cut(s)	188, 258
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	129, 174, 228, 283
HpyAV	CCTTC	3 cut(s)	45, 223, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	84, 173, 287, 297
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	50, 94
LpnPI	CCDG	8 cut(s)	26, 56, 89, 91, 116, 149, 176, 273
Lsp1109I	GCAGC	2 cut(s)	208, 280
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	204
MalI	GATC	2 cut(s)	52, 96
MboI	GATC	2 cut(s)	50, 94
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	79, 82, 115, 168, 178, 225
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	115, 221
MspR9I	CCNGG	2 cut(s)	104, 164
MvaI	CCWGG	2 cut(s)	104, 164
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	50, 94
NlaIII	CATG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	223, 295
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	102, 162
PspGI	CCWGG	2 cut(s)	102, 162
PspPI	GGNCC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	111, 213
RsaNI	GTAC	2 cut(s)	110, 212
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	222, 294
Sau3AI	GATC	2 cut(s)	50, 94
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	104, 164
SetI	ASST	9 cut(s)	64, 93, 117, 184, 195, 205, 217, 234, 295
SfaNI	GCATC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	102, 162
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	199
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	221, 293
TspDTI	ATGAA	3 cut(s)	13, 17, 263
TspRI	CASTG	1 cut(s)	88
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.