Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

66461976 .. 66463135

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 123 bp

ATGTTTCCCGTCAGGTACCAGCAACTTTGGGAGATGTACAACAAGGCTAAGGCTAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAACAATGGGACTGTGGGAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

40

Amino Acids

4.9

Weight (kDa)

4.59

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	1 - 36	4.7e-13	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	17, 38, 96
AjnI	CCWGG	1 cut(s)	87
Asp718I	GGTACC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	48, 69
BsaJI	CCNNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
Bsp1407I	TGTACA	2 cut(s)	36, 94
Bsp143I	GATC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	15
BsrGI	TGTACA	2 cut(s)	36, 94
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	110
BstAUI	TGTACA	2 cut(s)	36, 94
BstDEI	CTNAG	2 cut(s)	48, 69
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	16, 37, 95
CviJI	RGCY	3 cut(s)	47, 53, 118
CviKI_1	RGCY	3 cut(s)	47, 53, 118
CviQI	GTAC	3 cut(s)	16, 37, 95
DdeI	CTNAG	2 cut(s)	48, 69
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	87
FaqI	GGGAC	1 cut(s)	119
FokI	GGATG	1 cut(s)	104
FspBI	CTAG	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	48, 69
KpnI	GGTACC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	32, 74, 101
MaeI	CTAG	1 cut(s)	54
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	64, 67, 108
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	17
RsaI	GTAC	3 cut(s)	17, 38, 96
RsaNI	GTAC	3 cut(s)	16, 37, 95
Sau3AI	GATC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	2 cut(s)	17, 78
SgeI	CNNG	7 cut(s)	20, 25, 31, 55, 66, 100, 101
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	110
TatI	WGTACW	2 cut(s)	36, 94
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.