Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

12167317 .. 12169599

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTGGTTTCTCTGCATACGCTTCCTCAATGAAGGGAGTAATTTAGATTCTTTGAATCTCAAACAATGCAAAGCCTATTTGCGAACGGACGGTCTTAGAATTTCAGGAACCCAATTGGTTTGTTTACAAAGAGTTGAAGAGCACCGGAGTAATTGTGATGTATCAGAAAAGGCGGCATCTGTTATTAGTTTTACTGTCGTGTCAATGGAGAACTATCGTGATGGGATTGATGTAGGAAACGATCTAGAGCTGAGTCTTCTAGCCATCCCGGTCAGCCAGCTTTTGAGCAAGCACTTGGAGCCTATTATTGAAGAGGAGCTTTTGAACGAGCACATGGACACTATTGAAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

4.59

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	55, 137, 311, 325, 347
AluBI	AGCT	3 cut(s)	250, 280, 319
AluI	AGCT	3 cut(s)	250, 280, 319
Alw21I	GWGCWC	2 cut(s)	144, 333
ApoI	RAATTY	1 cut(s)	99
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AsuC2I	CCSGG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	144, 333
BccI	CCATC	2 cut(s)	215, 272
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	245, 260
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	109, 300
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
BseGI	GGATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	144, 333
BsiSI	CCGG	2 cut(s)	145, 269
Bsp1286I	GDGCHC	2 cut(s)	144, 333
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	109, 300
BspQI	GCTCTTC	1 cut(s)	132
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	92, 196
Bst6I	CTCTTC	3 cut(s)	132, 306, 342
BstC8I	GCNNGC	2 cut(s)	278, 290
BstDEI	CTNAG	2 cut(s)	95, 251
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	278, 290
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	7 cut(s)	74, 250, 263, 276, 280, 301, 319
CviKI_1	RGCY	7 cut(s)	74, 250, 263, 276, 280, 301, 319
DdeI	CTNAG	2 cut(s)	95, 251
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	132, 306, 342
EarI	CTCTTC	3 cut(s)	132, 306, 342
FaeI	CATG	1 cut(s)	337
FaiI	YATR	2 cut(s)	17, 335
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	245, 260
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	2 cut(s)	145, 269
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	3 cut(s)	47, 55, 253
HpaII	CCGG	2 cut(s)	145, 269
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	105, 218, 245
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	92, 196
HpyCH4V	TGCA	2 cut(s)	15, 69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	95, 251
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	298, 316
LpnPI	CCDG	4 cut(s)	90, 158, 282, 290
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	245, 260
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	149, 248, 323
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	144, 333
MluCI	AATT	4 cut(s)	40, 99, 113, 151
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	35, 307, 343
MspI	CCGG	2 cut(s)	145, 269
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	109, 300
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	47, 55
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	109, 300
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	144, 333
SetI	ASST	4 cut(s)	252, 282, 321, 354
SfaNI	GCATC	1 cut(s)	185
Sse9I	AATT	4 cut(s)	40, 99, 113, 151
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	245, 260
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	92, 196
TasI	AATT	4 cut(s)	40, 99, 113, 151
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	47, 55
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	99
XbaI	TCTAGA	1 cut(s)	244
XspI	CTAG	2 cut(s)	245, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.