Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002159

Physical Location & Seq

Genomic Coordinates Reverse (-)

4638809 .. 4640771

Gene Structure 1963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTACAACAAGGCTGAGGCTAGTTTTTGGACTGGTACATGTTCATTTAGTGAAACAAAGATGAAAATTTCTTTCTTTCATGTCAATTTTGGAGTTTTCTTGTTTGTATATGTGGGTTTTGAATTGGGGTTTGCTTTGCTTGGAATTGAGAGGGTATCTGAACAATGGTGGTGGCTTTCACTTGAGTTTATTGGAATTCAGAGGAAATTTACTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGATTGACTCCAAGAAACACTTTATAAGTCATGTCCTGGCATTTCTGAGGCAAGGTGAGGCCAAGGTTGCTCGACCTAGTTCTGTACCTCCCGTTGCTCTGAAGGTTGGTGGTGGAATGATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGAACTGAGAGTAAGTTTTTCAATTCCTAGTTGTTCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

150

Amino Acids

17.0

Weight (kDa)

8.58

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	71 - 108	2.9e-07	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002159)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501171 RchiOBHm_Chr1g0376431 RchiOBHm_Chr1g0381081 RchiOBHm_Chr5g0007381 RchiOBHm_Chr5g0009181 RchiOBHm_Chr5g0042861 RchiOBHm_Chr5g0063681 RchiOBHm_Chr7g0185651 RchiOBHm_Chr7g0200211
rosa_laevigata	RLG00000014928 RLG00000015795 RLG00000022060
rosa_multiflora	Rmu_sc0000982.1_g000050 Rmu_sc0002132.1_g000042 Rmu_sc0003441.1_g000019 Rmu_sc0017837.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080390 Rroxscaffold_2G00140440 Rroxscaffold_3G00223150 Rroxscaffold_5G00367930 Rroxscaffold_6G00404660 Rroxscaffold_7G00177030
rosa_rugosa	Rorug02G0074200 Rorug07G0221300 Rorug07G0221400.1
rosa_samantha	Rh1AG113700 Rh1CG077800 Rh1CG443800 Rh2BG384700 Rh3BG102400 Rh3BG244200 Rh3CG243500 Rh5AG085300 Rh5AG345500 Rh5BG075700 Rh5BG090300 Rh6AG040700 Rh6AG140900 Rh6BG182400 Rh6CG480800 Rh7AG179400 Rh7DG279000
rosa_wichuraiana	Rw3G012350 Rw4G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AcsI	RAATTY	3 cut(s)	66, 195, 206
AcuI	CTGAAG	2 cut(s)	377, 393
AfaI	GTAC	4 cut(s)	5, 37, 240, 342
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	122, 432
AjnI	CCWGG	2 cut(s)	231, 291
AoxI	GGCC	2 cut(s)	315, 385
ApoI	RAATTY	3 cut(s)	66, 195, 206
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	233, 293
BfaI	CTAG	3 cut(s)	21, 333, 438
Bme1390I	CCNGG	2 cut(s)	233, 293
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	233, 293
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	231, 318
Bse1I	ACTGG	2 cut(s)	37, 389
BseBI	CCWGG	2 cut(s)	233, 293
BseDI	CCNNGG	2 cut(s)	231, 318
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	4 cut(s)	6, 204, 293, 407
BseNI	ACTGG	2 cut(s)	37, 389
BseRI	GAGGAG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	317, 387
BsnI	GGCC	2 cut(s)	317, 387
Bsp1407I	TGTACA	2 cut(s)	3, 238
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	317, 387
BspCNI	CTCAG	4 cut(s)	7, 205, 294, 408
BsrGI	TGTACA	2 cut(s)	3, 238
BsrI	ACTGG	2 cut(s)	37, 389
BssECI	CCNNGG	2 cut(s)	231, 318
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	233, 293
BstAUI	TGTACA	2 cut(s)	3, 238
BstDEI	CTNAG	4 cut(s)	15, 213, 302, 416
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	233, 293
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	231, 291
BsuRI	GGCC	2 cut(s)	317, 387
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	4 cut(s)	4, 36, 239, 341
CspCI	CAANNNNNGTGG	2 cut(s)	152, 187
CviAII	CATG	3 cut(s)	39, 80, 287
CviJI	RGCY	6 cut(s)	14, 20, 175, 254, 317, 387
CviKI_1	RGCY	6 cut(s)	14, 20, 175, 254, 317, 387
CviQI	GTAC	4 cut(s)	4, 36, 239, 341
DdeI	CTNAG	4 cut(s)	15, 213, 302, 416
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	377, 393
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	231, 291
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	42, 83, 290
FaiI	YATR	7 cut(s)	40, 81, 109, 111, 281, 288, 451
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	3 cut(s)	38, 79, 286
FokI	GGATG	1 cut(s)	248
FspBI	CTAG	3 cut(s)	21, 333, 438
HaeIII	GGCC	2 cut(s)	317, 387
Hin1II	CATG	3 cut(s)	42, 83, 290
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	6 cut(s)	160, 201, 258, 303, 357, 412
HpyAV	CCTTC	2 cut(s)	352, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	4 cut(s)	15, 213, 302, 416
Hsp92II	CATG	3 cut(s)	42, 83, 290
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	18, 218, 245, 278, 305, 402
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	3 cut(s)	21, 333, 438
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MluCI	AATT	7 cut(s)	66, 85, 122, 144, 195, 206, 432
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	9 cut(s)	10, 144, 195, 208, 211, 244, 297, 307, 354
MspR9I	CCNGG	2 cut(s)	233, 293
MvaI	CCWGG	2 cut(s)	233, 293
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	42, 83, 290
NspI	RCATGY	1 cut(s)	42
PciI	ACATGT	1 cut(s)	38
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PscI	ACATGT	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	231, 291
PspGI	CCWGG	2 cut(s)	231, 291
PspPI	GGNCC	1 cut(s)	386
RsaI	GTAC	4 cut(s)	5, 37, 240, 342
RsaNI	GTAC	4 cut(s)	4, 36, 239, 341
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	233, 293
SetI	ASST	6 cut(s)	222, 313, 324, 334, 346, 363
SfaNI	GCATC	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	7 cut(s)	66, 85, 122, 144, 195, 206, 432
SspMI	CTAG	3 cut(s)	21, 333, 438
StyD4I	CCNGG	2 cut(s)	231, 291
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	1 cut(s)	328
TasI	AATT	7 cut(s)	66, 85, 122, 144, 195, 206, 432
TatI	WGTACW	2 cut(s)	3, 238
TscAI	CASTG	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	33, 68, 77, 392
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	3 cut(s)	66, 195, 206
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	3 cut(s)	21, 333, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.