Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

18762637 .. 18763785

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATCATGAGTGCTATGACATGTTCTGGCCTGAGTAGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCCAGAAGTAGGATGGGTGTTGATCATGGCGTTCGAGGTCGCGGCAGCAGTGATCAAGATGGCGGCGGGGGCGGAGGTGCCCAAGTTGATTGTAATTTTTCTAGGGTTTGTGTTGAATAGTTGTCTTGGGCCTGGATCTGGGCTTGGTTGGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTGGTGGGCCTGTTGAGATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.39

Weight (kDa)

4.36

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	62, 113, 134, 137, 143
AclWI	GGATC	1 cut(s)	214
AfiI	CCNNNNNNNGG	5 cut(s)	80, 209, 234, 248, 254
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	202, 247
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	3 cut(s)	28, 200, 260
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	200, 260
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	78, 124
BciT130I	CCWGG	2 cut(s)	204, 249
BclI	TGATCA	3 cut(s)	3, 93, 123
BfaI	CTAG	2 cut(s)	68, 173
BisI	GCNGC	4 cut(s)	63, 114, 117, 135
BlsI	GCNGC	4 cut(s)	64, 115, 118, 136
Bme1390I	CCNGG	2 cut(s)	204, 249
BmgT120I	GGNCC	2 cut(s)	200, 260
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	204, 249
BpmI	CTGGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 209, 234, 248, 254
BseBI	CCWGG	2 cut(s)	204, 249
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	5 cut(s)	80, 209, 234, 248, 254
BseMII	CTCAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	30, 202, 262
BshNI	GGYRCC	1 cut(s)	148
BslI	CCNNNNNNNGG	5 cut(s)	80, 209, 234, 248, 254
BsnI	GGCC	3 cut(s)	30, 202, 262
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	3, 93, 123, 206
BspACI	CCGC	5 cut(s)	62, 113, 134, 137, 143
BspANI	GGCC	3 cut(s)	30, 202, 262
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	4 cut(s)	3, 93, 123, 206
Bst2UI	CCWGG	2 cut(s)	204, 249
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	4 cut(s)	6, 96, 126, 209
BstMBI	GATC	4 cut(s)	3, 93, 123, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 140, 259
BstNI	CCWGG	2 cut(s)	204, 249
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	202, 247
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	30, 202, 262
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	200, 260
CviAII	CATG	3 cut(s)	7, 21, 97
CviJI	RGCY	7 cut(s)	30, 53, 65, 202, 214, 253, 262
CviKI_1	RGCY	7 cut(s)	30, 53, 65, 202, 214, 253, 262
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	4 cut(s)	5, 95, 125, 208
DpnII	GATC	4 cut(s)	3, 93, 123, 206
EciI	GGCGGA	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	202, 247
FaeI	CATG	3 cut(s)	10, 24, 100
FaiI	YATR	4 cut(s)	8, 17, 22, 98
FatI	CATG	3 cut(s)	6, 20, 96
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	3 cut(s)	3, 93, 123
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	63, 114, 117, 135
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	63, 114, 117, 135
FspBI	CTAG	2 cut(s)	68, 173
GluI	GCNGC	4 cut(s)	63, 114, 117, 135
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	30, 202, 262
Hin1II	CATG	3 cut(s)	10, 24, 100
HinfI	GANTC	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	3 cut(s)	7, 74, 127
Hpy8I	GTNNAC	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 140, 259
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	10, 24, 100
Ksp22I	TGATCA	3 cut(s)	3, 93, 123
Kzo9I	GATC	4 cut(s)	3, 93, 123, 206
LpnPI	CCDG	9 cut(s)	12, 39, 44, 87, 189, 195, 216, 234, 261
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	68, 173
MalI	GATC	4 cut(s)	5, 95, 125, 208
MboI	GATC	4 cut(s)	3, 93, 123, 206
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	43, 52, 100, 139
MseI	TTAA	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	204, 249
MvaI	CCWGG	2 cut(s)	204, 249
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	59, 140, 259
NdeII	GATC	4 cut(s)	3, 93, 123, 206
NlaIII	CATG	3 cut(s)	10, 24, 100
NlaIV	GGNNCC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	24
PagI	TCATGA	1 cut(s)	6
PciI	ACATGT	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	64, 115, 118, 136
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	202, 247
PspGI	CCWGG	2 cut(s)	202, 247
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	200, 260
PsuI	RGATCY	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	4 cut(s)	63, 114, 117, 135
Sau3AI	GATC	4 cut(s)	3, 93, 123, 206
Sau96I	GGNCC	2 cut(s)	200, 260
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	204, 249
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	2 cut(s)	111, 150
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	5 cut(s)	62, 113, 134, 137, 143
SspMI	CTAG	2 cut(s)	68, 173
StyD4I	CCNGG	2 cut(s)	202, 247
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	165
TauI	GCSGC	3 cut(s)	65, 116, 137
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	116
TspRI	CASTG	1 cut(s)	126
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	68, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.