Rmu_sc0005690.1_g000014

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005690.1
OG0002162
Physical Location & Seq
Forward (+)
49974 .. 52135
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005690.1_g000014.1.cds

Sequence Viewer

Length: 738 bp
atgatcatgagtgctataacatgttctggcctgagtcgacttgttttggaggctggagaggtgcctctagttccggaagcaagttgggtgttgatcatggtgttcgaggtggcggcagcggtgatcaagatggcggcgacggcagaggcacccaagttggctgtaatttttctagggtttgtgttgaatggttgtcttgggcctggatctgggcttggttgggagtccttgtttgggtttcctattcctaggcttggaccaagagggtcaggacgtcgcttcttcgatcggccctcactgcacctacatccactgcgacgtaacagacgaggatcaagtgaagagcctgatcaaatcaacggtccagatgcacggccgcctggacatcatgttcagcaacgctggaatattctgctgtccgagcagacggtgatggagtttgacttatccaagtacgacaagctcatggcggtcaatttacgtgggatggtggcgtgtgtgaagcacgcggcgcgggccatggtggaaggtggagttaaggggagcgtgacatgcacggcgagcgttgtagcgactactggattagagtggttccgactacaccatgtcaaagcacgccattttggggctggtgaggtcggcgagtgtccagctcggtgcgtgaactgcgtgtcgccggggccttgtcatacgccgatcatggactcgttgttgccttcaaggatgtggaggagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

245

Amino Acids

26.66

Weight (kDa)

9.2

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 277
AccB1I GGYRCC 2 cut(s) 61, 148
AccI GTMKAC 1 cut(s) 37
AccII CGCG 2 cut(s) 509, 514
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 7 cut(s) 113, 119, 134, 377, 470, 509, 514
AclWI GGATC 2 cut(s) 214, 340
AcoI YGGCCR 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 4 cut(s) 209, 234, 254, 625
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 187, 720
AjnI CCWGG 2 cut(s) 202, 379
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 2 cut(s) 463, 653
AluI AGCT 2 cut(s) 463, 653
AlwI GGATC 2 cut(s) 214, 340
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 6 cut(s) 28, 200, 290, 374, 516, 680
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 6 cut(s) 200, 257, 291, 362, 516, 680
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 3 cut(s) 133, 442, 644
AvaII GGWCC 2 cut(s) 257, 362
AvrII CCTAGG 1 cut(s) 248
BanI GGYRCC 2 cut(s) 61, 148
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 124, 427, 481
BceAI ACGGC 3 cut(s) 156, 389, 573
BciT130I CCWGG 2 cut(s) 204, 381
BclI TGATCA 4 cut(s) 3, 93, 123, 349
BcnI CCSGG 1 cut(s) 678
BfaI CTAG 3 cut(s) 68, 173, 249
BisI GCNGC 5 cut(s) 114, 117, 135, 377, 510
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 5 cut(s) 115, 118, 136, 378, 511
Bme1390I CCNGG 3 cut(s) 204, 381, 678
Bme18I GGWCC 2 cut(s) 257, 362
BmgT120I GGNCC 6 cut(s) 200, 257, 291, 362, 516, 680
BmiI GGNNCC 4 cut(s) 63, 150, 593, 681
BmrFI CCNGG 3 cut(s) 204, 381, 678
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 248, 519, 677
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 234, 254, 625
Bse1I ACTGG 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 2 cut(s) 204, 381
BseDI CCNNGG 3 cut(s) 248, 519, 677
BseGI GGATG 3 cut(s) 307, 492, 729
BseLI CCNNNNNNNGG 4 cut(s) 209, 234, 254, 625
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 583
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 509, 514
Bsh1285I CGRYCG 2 cut(s) 289, 377
BshFI GGCC 6 cut(s) 30, 202, 292, 376, 518, 682
BshNI GGYRCC 2 cut(s) 61, 148
BsiEI CGRYCG 2 cut(s) 289, 377
BsiSI CCGG 2 cut(s) 74, 677
BslI CCNNNNNNNGG 4 cut(s) 209, 234, 254, 625
BsnI GGCC 6 cut(s) 30, 202, 292, 376, 518, 682
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 7 cut(s) 113, 119, 134, 377, 470, 509, 514
BspANI GGCC 6 cut(s) 30, 202, 292, 376, 518, 682
BspCNI CTCAG 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 2 cut(s) 509, 514
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 4 cut(s) 63, 150, 593, 681
BspPI GGATC 2 cut(s) 214, 340
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 2 cut(s) 61, 148
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 3 cut(s) 248, 519, 677
BssMI GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 248, 519
Bst2UI CCWGG 2 cut(s) 204, 381
Bst4CI ACNGT 2 cut(s) 362, 430
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 4 cut(s) 507, 516, 562, 616
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 3 cut(s) 307, 492, 729
BstFNI CGCG 2 cut(s) 509, 514
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 8 cut(s) 6, 96, 126, 209, 289, 335, 352, 699
BstMBI GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
BstMCI CGRYCG 2 cut(s) 289, 377
BstMWI GCNNNNNNNGC 8 cut(s) 140, 298, 421, 511, 515, 552, 561, 666
BstNI CCWGG 2 cut(s) 204, 381
BstNSI RCATGY 2 cut(s) 24, 555
BstSCI CCNGG 3 cut(s) 202, 379, 676
BstUI CGCG 2 cut(s) 509, 514
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BstZI CGGCCG 1 cut(s) 374
BsuRI GGCC 6 cut(s) 30, 202, 292, 376, 518, 682
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 3 cut(s) 307, 492, 729
BtsI GCAGTG 2 cut(s) 296, 311
BtsIMutI CAGTG 2 cut(s) 296, 311
Cac8I GCNNGC 4 cut(s) 507, 516, 562, 616
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 6 cut(s) 200, 257, 291, 362, 516, 680
Csp6I GTAC 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 9 cut(s) 7, 21, 97, 389, 466, 520, 552, 605, 700
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 32
DpnI GATC 8 cut(s) 5, 95, 125, 208, 288, 334, 351, 698
DpnII GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
EaeI YGGCCR 1 cut(s) 374
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EclXI CGGCCG 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 248, 519
Eco47I GGWCC 2 cut(s) 257, 362
Eco52I CGGCCG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 202, 379
EcoT14I CCWWGG 2 cut(s) 248, 519
ErhI CCWWGG 2 cut(s) 248, 519
FaeI CATG 9 cut(s) 10, 24, 100, 392, 469, 523, 555, 608, 703
FatI CATG 9 cut(s) 6, 20, 96, 388, 465, 519, 551, 604, 699
FauI CCCGC 1 cut(s) 507
FbaI TGATCA 4 cut(s) 3, 93, 123, 349
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 114, 117, 135, 377, 510
FokI GGATG 2 cut(s) 294, 499
Fsp4HI GCNGC 5 cut(s) 114, 117, 135, 377, 510
FspBI CTAG 3 cut(s) 68, 173, 249
GlaI GCGC 1 cut(s) 513
GluI GCNGC 5 cut(s) 114, 117, 135, 377, 510
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 6 cut(s) 30, 202, 292, 376, 518, 682
HapII CCGG 2 cut(s) 74, 677
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 9 cut(s) 10, 24, 100, 392, 469, 523, 555, 608, 703
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 3 cut(s) 34, 224, 704
HpaII CCGG 2 cut(s) 74, 677
HphI GGTGA 3 cut(s) 133, 442, 644
Hpy166II GTNNAC 2 cut(s) 38, 664
Hpy188I TCNGA 2 cut(s) 421, 596
Hpy188III TCNNGA 5 cut(s) 7, 74, 127, 270, 365
Hpy8I GTNNAC 2 cut(s) 38, 664
Hpy99I CGWCG 3 cut(s) 142, 279, 321
HpyAV CCTTC 2 cut(s) 521, 726
HpyCH4III ACNGT 2 cut(s) 362, 430
HpyCH4IV ACGT 3 cut(s) 274, 319, 481
HpyCH4V TGCA 3 cut(s) 301, 371, 555
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 298, 421, 511, 515, 552, 561, 666
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 3 cut(s) 274, 319, 481
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 9 cut(s) 10, 24, 100, 392, 469, 523, 555, 608, 703
HspAI GCGC 1 cut(s) 512
Kpn2I TCCGGA 1 cut(s) 73
Ksp22I TGATCA 4 cut(s) 3, 93, 123, 349
Kzo9I GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 358
MaeI CTAG 3 cut(s) 68, 173, 249
MaeII ACGT 3 cut(s) 274, 319, 481
MaeIII GTNAC 2 cut(s) 320, 547
MalI GATC 8 cut(s) 5, 95, 125, 208, 288, 334, 351, 698
MboI GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
MboII GAAGA 2 cut(s) 274, 353
MflI RGATCY 1 cut(s) 206
MluCI AATT 2 cut(s) 165, 475
MlyI GAGTC 3 cut(s) 43, 233, 698
MmeI TCCRAC 1 cut(s) 619
MroI TCCGGA 1 cut(s) 73
MseI TTAA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 74, 677
MspR9I CCNGG 3 cut(s) 204, 381, 678
MvaI CCWGG 2 cut(s) 204, 381
MvnI CGCG 2 cut(s) 509, 514
MwoI GCNNNNNNNGC 8 cut(s) 140, 298, 421, 511, 515, 552, 561, 666
NciI CCSGG 1 cut(s) 678
NcoI CCATGG 1 cut(s) 519
NdeII GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
NlaIII CATG 9 cut(s) 10, 24, 100, 392, 469, 523, 555, 608, 703
NlaIV GGNNCC 4 cut(s) 63, 150, 593, 681
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 2 cut(s) 24, 555
PagI TCATGA 1 cut(s) 6
PciI ACATGT 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PkrI GCNGC 5 cut(s) 115, 118, 136, 378, 511
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 3 cut(s) 42, 232, 698
PpsI GAGTC 3 cut(s) 42, 232, 698
Ppu21I YACGTR 1 cut(s) 482
PscI ACATGT 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 202, 379
PspGI CCWGG 2 cut(s) 202, 379
PspN4I GGNNCC 4 cut(s) 63, 150, 593, 681
PspPI GGNCC 6 cut(s) 200, 257, 291, 362, 516, 680
PsuI RGATCY 1 cut(s) 206
PvuI CGATCG 1 cut(s) 289
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SalI GTCGAC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 5 cut(s) 114, 117, 135, 377, 510
Sau3AI GATC 8 cut(s) 3, 93, 123, 206, 286, 332, 349, 696
Sau96I GGNCC 6 cut(s) 200, 257, 291, 362, 516, 680
SchI GAGTC 3 cut(s) 43, 233, 698
ScrFI CCNGG 3 cut(s) 204, 381, 678
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 2 cut(s) 257, 362
Sse9I AATT 2 cut(s) 165, 475
SsiI CCGC 7 cut(s) 113, 119, 134, 377, 470, 509, 514
SspI AATATT 1 cut(s) 409
SspMI CTAG 3 cut(s) 68, 173, 249
StyD4I CCNGG 3 cut(s) 202, 379, 676
StyI CCWWGG 2 cut(s) 248, 519
TaaI ACNGT 2 cut(s) 362, 430
TaiI ACGT 3 cut(s) 277, 322, 484
TaqI TCGA 3 cut(s) 37, 105, 285
TasI AATT 2 cut(s) 165, 475
TauI GCSGC 4 cut(s) 116, 137, 379, 512
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 303, 318
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 547
TspRI CASTG 2 cut(s) 303, 318
VpaK11BI GGWCC 2 cut(s) 257, 362
XceI RCATGY 2 cut(s) 24, 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 3 cut(s) 68, 173, 249
ZraI GACGTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.