Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

54659016 .. 54659951

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTCTTCCTTCTGAGAGCGTTTCTAGGGTTTCTGGCTGTGGTTCATGGCGGCACTGCAAACTCAGCTAGTAAGGGCGGGTTTCCTTTTCCTTCTGGTTCCTTTGAAGATGGCGGCGAGGGAGCCATTCATCGATGCCTATTCCTGACTCCTTCAAGGGAAATTTCTCGATTGCGATTGACGTCTGTTGGTGGTAGTCTTGTACCTTGGAAGGGAGGTAGCGCTCTCCTTCCTTCTCCCTTTTTCCGTGGTGGTGACAACGATGGCGGTATATGTGGTATTGCCGGTGACTCTACACTGGAGGTTGATGTCCGACTAGAAGAGCTTGATGGTGGAGCTCGCTCTCATCTGCCGGAGTTGCTTGCTGGCAGCAATGATCATGAGTGCTATGACATGTTCTGGCCTGAGTCGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCTGGAAGCAGGTTGGGTGTTGATCATGGCGTTCGAGGTGGCGGCAGCGGTGATCAAGATGGTGGGGCGGCGGAGGCGCCCAAGTTGGCCATAATTCTTCTAGGGTTTGTGTTGAATGCTTGTCTTCGGCCTGGATCTAGGCTTGGTTGGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTGGTGGGCCTGTTGGGATTTTTCATTTTGGAAGGGATGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

23.11

Weight (kDa)

5.65

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	9 cut(s)	51, 78, 114, 267, 435, 486, 492, 512, 515
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	182, 521
AfaI	GTAC	1 cut(s)	204
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	4 cut(s)	212, 606, 620, 626
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	107, 156, 559
AjnI	CCWGG	2 cut(s)	574, 619
AluBI	AGCT	3 cut(s)	68, 325, 338
AluI	AGCT	3 cut(s)	68, 325, 338
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	586
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	4 cut(s)	401, 531, 572, 632
ApeKI	GCWGC	2 cut(s)	369, 489
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	224, 523
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	266, 299, 506
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	381, 501
BccI	CCATC	5 cut(s)	104, 257, 323, 497, 656
BciT130I	CCWGG	2 cut(s)	576, 621
BclI	TGATCA	3 cut(s)	376, 466, 496
BfaI	CTAG	6 cut(s)	26, 69, 317, 441, 545, 582
BfoI	RGCGCY	2 cut(s)	225, 524
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	7 cut(s)	52, 115, 370, 436, 487, 490, 513
BlsI	GCNGC	7 cut(s)	53, 116, 371, 437, 488, 491, 514
Bme1390I	CCNGG	2 cut(s)	576, 621
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	3 cut(s)	100, 124, 522
BmrFI	CCNGG	2 cut(s)	576, 621
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	560
BpmI	CTGGAG	2 cut(s)	320, 448
Bsa29I	ATCGAT	1 cut(s)	133
BsaHI	GRCGYC	2 cut(s)	182, 521
BsaJI	CCNNGG	3 cut(s)	206, 247, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 606, 620, 626
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	576, 621
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	206, 247, 620
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	4 cut(s)	212, 606, 620, 626
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	5, 78, 396
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	381, 501
BshFI	GGCC	4 cut(s)	403, 533, 574, 634
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	285, 353
BslI	CCNNNNNNNGG	4 cut(s)	212, 606, 620, 626
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	403, 533, 574, 634
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	376, 466, 496, 578
BspACI	CCGC	9 cut(s)	51, 78, 114, 267, 435, 486, 492, 512, 515
BspANI	GGCC	4 cut(s)	403, 533, 574, 634
BspCNI	CTCAG	3 cut(s)	6, 77, 397
BspDI	ATCGAT	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	100, 124, 522
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	586
BspQI	GCTCTTC	2 cut(s)	11, 315
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	206, 247, 620
BssMI	GATC	4 cut(s)	376, 466, 496, 578
BssNI	GRCGYC	2 cut(s)	182, 521
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	576, 621
Bst6I	CTCTTC	2 cut(s)	11, 315
BstACI	GRCGYC	2 cut(s)	182, 521
BstC8I	GCNNGC	3 cut(s)	340, 363, 367
BstDEI	CTNAG	3 cut(s)	14, 64, 405
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	2 cut(s)	225, 524
BstHHI	GCGC	2 cut(s)	224, 523
BstKTI	GATC	4 cut(s)	379, 469, 499, 581
BstMBI	GATC	4 cut(s)	376, 466, 496, 578
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 358, 432, 518, 631
BstNI	CCWGG	2 cut(s)	576, 621
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	574, 619
BstV1I	GCAGC	2 cut(s)	381, 501
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
Bsu15I	ATCGAT	1 cut(s)	133
BsuRI	GGCC	4 cut(s)	403, 533, 574, 634
BsuTUI	ATCGAT	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 296
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	3 cut(s)	340, 363, 367
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	224, 523
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	632
ClaI	ATCGAT	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	4 cut(s)	47, 380, 394, 470
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	3 cut(s)	14, 64, 405
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	4 cut(s)	378, 468, 498, 580
DpnII	GATC	4 cut(s)	376, 466, 496, 578
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	11, 315
EarI	CTCTTC	2 cut(s)	11, 315
EciI	GGCGGA	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	574, 619
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	340
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	50, 383, 397, 473
FaiI	YATR	8 cut(s)	48, 272, 274, 381, 390, 395, 471, 536
FatI	CATG	4 cut(s)	46, 379, 393, 469
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	3 cut(s)	376, 466, 496
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	7 cut(s)	52, 115, 370, 436, 487, 490, 513
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	7 cut(s)	52, 115, 370, 436, 487, 490, 513
FspBI	CTAG	6 cut(s)	26, 69, 317, 441, 545, 582
GlaI	GCGC	2 cut(s)	223, 522
GluI	GCNGC	7 cut(s)	52, 115, 370, 436, 487, 490, 513
GsuI	CTGGAG	2 cut(s)	320, 448
HaeII	RGCGCY	2 cut(s)	225, 524
HaeIII	GGCC	4 cut(s)	403, 533, 574, 634
HapII	CCGG	2 cut(s)	285, 353
HhaI	GCGC	2 cut(s)	224, 523
Hin1I	GRCGYC	2 cut(s)	182, 521
Hin1II	CATG	4 cut(s)	50, 383, 397, 473
Hin6I	GCGC	2 cut(s)	222, 521
HinP1I	GCGC	2 cut(s)	222, 521
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	4 cut(s)	148, 290, 407, 596
HpaII	CCGG	2 cut(s)	285, 353
HphI	GGTGA	3 cut(s)	266, 299, 506
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	2 cut(s)	15, 314
Hpy188III	TCNNGA	5 cut(s)	145, 168, 380, 447, 500
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	8 cut(s)	20, 102, 162, 205, 239, 243, 651, 660
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 358, 432, 518, 631
HpyF3I	CTNAG	3 cut(s)	14, 64, 405
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	2 cut(s)	182, 521
Hsp92II	CATG	4 cut(s)	50, 383, 397, 473
HspAI	GCGC	2 cut(s)	222, 521
KasI	GGCGCC	1 cut(s)	520
Ksp22I	TGATCA	3 cut(s)	376, 466, 496
Kzo9I	GATC	4 cut(s)	376, 466, 496, 578
LguI	GCTCTTC	2 cut(s)	11, 315
LmnI	GCTCC	2 cut(s)	122, 335
Lsp1109I	GCAGC	2 cut(s)	381, 501
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	6 cut(s)	26, 69, 317, 441, 545, 582
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	254, 287
MalI	GATC	4 cut(s)	378, 468, 498, 580
MboI	GATC	4 cut(s)	376, 466, 496, 578
MboII	GAAGA	4 cut(s)	119, 332, 533, 560
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	2 cut(s)	162, 537
MluNI	TGGCCA	1 cut(s)	533
Mly113I	GGCGCC	1 cut(s)	521
MlyI	GAGTC	4 cut(s)	142, 284, 416, 605
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	112, 209, 295, 416, 425, 473, 511
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	2 cut(s)	285, 353
MspR9I	CCNGG	2 cut(s)	576, 621
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	2 cut(s)	576, 621
MwoI	GCNNNNNNNGC	5 cut(s)	65, 358, 432, 518, 631
NarI	GGCGCC	1 cut(s)	521
NdeII	GATC	4 cut(s)	376, 466, 496, 578
NlaIII	CATG	4 cut(s)	50, 383, 397, 473
NlaIV	GGNNCC	3 cut(s)	100, 124, 522
NmuCI	GTSAC	2 cut(s)	254, 287
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	2 cut(s)	11, 315
PctI	GAATGC	1 cut(s)	565
PkrI	GCNGC	7 cut(s)	53, 116, 371, 437, 488, 491, 514
PleI	GAGTC	4 cut(s)	142, 284, 415, 604
PluTI	GGCGCC	1 cut(s)	524
PpsI	GAGTC	4 cut(s)	142, 284, 415, 604
PscI	ACATGT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	574, 619
PspGI	CCWGG	2 cut(s)	574, 619
PspN4I	GGNNCC	3 cut(s)	100, 124, 522
PspPI	GGNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	409
SapI	GCTCTTC	2 cut(s)	11, 315
SatI	GCNGC	7 cut(s)	52, 115, 370, 436, 487, 490, 513
Sau3AI	GATC	4 cut(s)	376, 466, 496, 578
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	4 cut(s)	142, 284, 416, 605
ScrFI	CCNGG	2 cut(s)	576, 621
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	125
SfoI	GGCGCC	1 cut(s)	522
Sse9I	AATT	2 cut(s)	162, 537
SsiI	CCGC	9 cut(s)	51, 78, 114, 267, 435, 486, 492, 512, 515
SspDI	GGCGCC	1 cut(s)	520
SspMI	CTAG	6 cut(s)	26, 69, 317, 441, 545, 582
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	574, 619
StyI	CCWWGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	4 cut(s)	133, 169, 410, 478
TasI	AATT	2 cut(s)	162, 537
TauI	GCSGC	5 cut(s)	54, 117, 438, 489, 515
TscAI	CASTG	2 cut(s)	61, 303
TseFI	GTSAC	2 cut(s)	254, 287
TseI	GCWGC	2 cut(s)	369, 489
Tsp45I	GTSAC	2 cut(s)	254, 287
TspDTI	ATGAA	3 cut(s)	35, 119, 638
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	61, 303
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	6 cut(s)	26, 69, 317, 441, 545, 582
ZraI	GACGTC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.