Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

18471024 .. 18480633

Gene Structure 9610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAACGTTTCGGAGTCGGCGTTGGTTGTCGGCGATATAGCCGGTGAAGGAAAGCATGTGATTGTTGGAGGTCGAGTCGAAGGAAGTGAATCAAAGATTGGGGACGTTGATCCGGTCGTGGTAGCTGCTGAAATAGCTAGACCTAACGAAGGCGTCGGCCGCTACGTGCAAGACCTACAAGTACACCTTCGAACGCGACCCCGGTTTCCCTCTCCTCCCCAACGTCTTCTGATTGGGAGGATTGGGGAAGGGTTGAAGCGGGGAACGGTTCAGTTGAAGATGTCCGGAGATAGTAGGCAGCCTGCCATTGGTGACGGGGACTGGTGGGATCAGGATTGGATGGATCTTTTTTCTCCATCCGATGGTGGCAAGGGACCTTTCGATGTGTTGGACGACAGCGGTGCTGGTTCGGTGAATTGGTTATGGCAATCTTCTAGCGGAGGTGGAGACTGGTCGTGGTATTCTACTCTTGACGGCAGCAATGATCATGAGGGCTGGGACATGTTTTGGCTTGAGTCGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCTGGAAGCAGGTTGGGTGTTGATCATGGCGTTCGAGGTGGAGGCGACCAAGTTGGCAGTAATTCTTCTAGGGTAAGTGTGGACTGGCATGAAGCCATGAACCATGATGCAACCAAGCGCTATCAATGGCCTTTAGTCGGCTGGGGGAGGTTGGCAACTAGTGCCTCCATATTCGGGGAAGAAAATATGGCCCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

26.99

Weight (kDa)

4.85

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	5 cut(s)	160, 259, 399, 438, 543
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	3 cut(s)	104, 336, 351
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	183
AfeI	AGCGCT	1 cut(s)	671
AfiI	CCNNNNNNNGG	5 cut(s)	149, 308, 362, 689, 726
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	256, 277
AhlI	ACTAGT	1 cut(s)	710
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	2 cut(s)	125, 137
AluI	AGCT	2 cut(s)	125, 137
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	3 cut(s)	104, 336, 351
Aor13HI	TCCGGA	1 cut(s)	284
Aor51HI	AGCGCT	1 cut(s)	671
AoxI	GGCC	3 cut(s)	157, 680, 741
ApeKI	GCWGC	3 cut(s)	125, 298, 477
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	374, 742
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	56, 323, 424
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	112, 310, 489
BccI	CCATC	3 cut(s)	334, 356, 364
BceAI	ACGGC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BclI	TGATCA	2 cut(s)	484, 574
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	441
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	5 cut(s)	138, 435, 549, 621, 711
BfoI	RGCGCY	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	5 cut(s)	126, 160, 299, 478, 544
BlsI	GCNGC	5 cut(s)	127, 161, 300, 479, 545
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	374, 742
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	556
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	112, 284
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 60, 90
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 308, 362, 689, 726
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	326, 455, 641
Bse3DI	GCAATG	1 cut(s)	487
BseAI	TCCGGA	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	345, 356
BseLI	CCNNNNNNNGG	5 cut(s)	149, 308, 362, 689, 726
BseMI	GCAATG	1 cut(s)	487
BseNI	ACTGG	3 cut(s)	326, 455, 641
BseRI	GAGGAG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	112, 310, 489
BseYI	CCCAGC	2 cut(s)	495, 693
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	2 cut(s)	117, 160
BshFI	GGCC	3 cut(s)	159, 682, 743
BsiEI	CGRYCG	2 cut(s)	117, 160
BsiSI	CCGG	4 cut(s)	42, 113, 202, 285
BslFI	GGGAC	4 cut(s)	116, 332, 387, 512
BslI	CCNNNNNNNGG	5 cut(s)	149, 308, 362, 689, 726
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	4 cut(s)	116, 332, 387, 512
BsnI	GGCC	3 cut(s)	159, 682, 743
Bsp119I	TTCGAA	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	109, 328, 343, 484, 574
BspACI	CCGC	5 cut(s)	160, 259, 399, 438, 543
BspANI	GGCC	3 cut(s)	159, 682, 743
BspEI	TCCGGA	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	3 cut(s)	104, 336, 351
BspT104I	TTCGAA	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	326, 455, 641
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	5 cut(s)	109, 328, 343, 484, 574
BssNI	GRCGYC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBAI	YACGTR	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	345, 356
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	5 cut(s)	112, 331, 346, 487, 577
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	5 cut(s)	109, 328, 343, 484, 574
BstMCI	CGRYCG	2 cut(s)	117, 160
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 159, 540, 713
BstNSI	RCATGY	2 cut(s)	59, 505
BstSCI	CCNGG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	112, 310, 489
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	159, 682, 743
BtsCI	GGATG	2 cut(s)	345, 356
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	374, 742
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	7 cut(s)	56, 488, 502, 578, 641, 649, 656
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	5 cut(s)	111, 330, 345, 486, 576
DpnII	GATC	5 cut(s)	109, 328, 343, 484, 574
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	374
Eco47III	AGCGCT	1 cut(s)	671
Eco52I	CGGCCG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	374
FaeI	CATG	7 cut(s)	59, 491, 505, 581, 644, 652, 659
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	4 cut(s)	116, 332, 387, 512
FatI	CATG	7 cut(s)	55, 487, 501, 577, 640, 648, 655
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	2 cut(s)	484, 574
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	126, 160, 299, 478, 544
FokI	GGATG	2 cut(s)	343, 352
Fsp4HI	GCNGC	5 cut(s)	126, 160, 299, 478, 544
FspBI	CTAG	5 cut(s)	138, 435, 549, 621, 711
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	5 cut(s)	126, 160, 299, 478, 544
GsaI	CCCAGC	2 cut(s)	499, 697
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	673
HaeIII	GGCC	3 cut(s)	159, 682, 743
HapII	CCGG	4 cut(s)	42, 113, 202, 285
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	59, 491, 505, 581, 644, 652, 659
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	14, 75, 89, 515
HpaII	CCGG	4 cut(s)	42, 113, 202, 285
HphI	GGTGA	3 cut(s)	56, 323, 424
Hpy166II	GTNNAC	3 cut(s)	184, 519, 634
Hpy188I	TCNGA	3 cut(s)	13, 231, 361
Hpy188III	TCNNGA	5 cut(s)	285, 332, 470, 488, 555
Hpy8I	GTNNAC	3 cut(s)	184, 519, 634
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	41, 74, 143, 197, 242
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	4 cut(s)	6, 105, 165, 223
HpyCH4V	TGCA	2 cut(s)	169, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 159, 540, 713
HpySE526I	ACGT	4 cut(s)	6, 105, 165, 223
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	59, 491, 505, 581, 644, 652, 659
HspAI	GCGC	1 cut(s)	670
Kpn2I	TCCGGA	1 cut(s)	284
Ksp22I	TGATCA	2 cut(s)	484, 574
Kzo9I	GATC	5 cut(s)	109, 328, 343, 484, 574
Lsp1109I	GCAGC	3 cut(s)	112, 310, 489
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	5 cut(s)	138, 435, 549, 621, 711
MaeII	ACGT	4 cut(s)	6, 105, 165, 223
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	5 cut(s)	111, 330, 345, 486, 576
MboI	GATC	5 cut(s)	109, 328, 343, 484, 574
MboII	GAAGA	5 cut(s)	218, 289, 423, 609, 743
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	2 cut(s)	415, 613
MlyI	GAGTC	3 cut(s)	23, 84, 524
MmeI	TCCRAC	2 cut(s)	46, 369
MroI	TCCGGA	1 cut(s)	284
MseI	TTAA	1 cut(s)	751
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	4 cut(s)	42, 113, 202, 285
MspR9I	CCNGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	134, 159, 540, 713
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	5 cut(s)	109, 328, 343, 484, 574
NlaIII	CATG	7 cut(s)	59, 491, 505, 581, 644, 652, 659
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	2 cut(s)	59, 505
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	487
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 162
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	127, 161, 300, 479, 545
PleI	GAGTC	3 cut(s)	22, 83, 523
PpsI	GAGTC	3 cut(s)	22, 83, 523
Ppu21I	YACGTR	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	374
PscI	ACATGT	1 cut(s)	501
Psp1406I	AACGTT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	374
PspFI	CCCAGC	2 cut(s)	495, 693
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	374, 742
PspPPI	RGGWCCY	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	5 cut(s)	126, 160, 299, 478, 544
Sau3AI	GATC	5 cut(s)	109, 328, 343, 484, 574
Sau96I	GGNCC	2 cut(s)	374, 742
SchI	GAGTC	3 cut(s)	23, 84, 524
ScrFI	CCNGG	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	2 cut(s)	415, 613
SsiI	CCGC	5 cut(s)	160, 259, 399, 438, 543
SspMI	CTAG	5 cut(s)	138, 435, 549, 621, 711
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	4 cut(s)	9, 108, 168, 226
TaqI	TCGA	6 cut(s)	73, 78, 190, 381, 518, 586
TasI	AATT	2 cut(s)	415, 613
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	2 cut(s)	162, 546
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	125, 298, 477
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	17, 657, 665
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	147
XceI	RCATGY	2 cut(s)	59, 505
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	5 cut(s)	138, 435, 549, 621, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.