RLG00000023365

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002162
Physical Location & Seq
Forward (+)
22583162 .. 22585053
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023365

Sequence Viewer

Length: 408 bp
ATGAAGGTTGATTTGGTTTTGGATCGGCTTCAGATTGTTGGTCCTCATTTTGGGTGGCCTGGAGGAGTTTTGGAGGCTGGAGTTGCAGCTCTAGTTTTGGAGGCAGGTTTGGTGTTGATCACGACGTTTGAGGTGGTGGCGGCGATGGAGGTGACAAAGTTGGCAGTAACTCTTCTAGGGTTTGTGTTGAATGGTTGTCTTGGGCCTGGGTCTGGCCTTGGTTGGGAGTCCCTGTTTGGATTTCTCATTTCTAGGCTCGGTGGGCCTGCTGGGCTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAAGAGGATTAAGCTGATAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.36

Weight (kDa)

6.54

Isoelectric Point (pI)

18.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 50, 212, 223
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 2 cut(s) 58, 205
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 89, 397
AluI AGCT 2 cut(s) 89, 397
AlwI GGATC 1 cut(s) 30
AoxI GGCC 4 cut(s) 56, 203, 214, 263
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 41, 203, 263
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 2 cut(s) 60, 207
BclI TGATCA 1 cut(s) 117
BfaI CTAG 3 cut(s) 92, 176, 252
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 271
BisI GCNGC 2 cut(s) 87, 141
BlsI GCNGC 2 cut(s) 88, 142
Bme1390I CCNGG 2 cut(s) 60, 207
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 3 cut(s) 41, 203, 263
BmrFI CCNGG 2 cut(s) 60, 207
BpmI CTGGAG 2 cut(s) 81, 99
BsaJI CCNNGG 2 cut(s) 206, 217
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 212, 223
BseBI CCWGG 2 cut(s) 60, 207
BseDI CCNNGG 2 cut(s) 206, 217
BseLI CCNNNNNNNGG 3 cut(s) 50, 212, 223
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 4 cut(s) 58, 205, 216, 265
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 50, 212, 223
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 4 cut(s) 58, 205, 216, 265
Bsp143I GATC 2 cut(s) 22, 117
BspACI CCGC 1 cut(s) 140
BspANI GGCC 4 cut(s) 58, 205, 216, 265
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 206, 217
BssMI GATC 2 cut(s) 22, 117
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 60, 207
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 25, 120
BstMBI GATC 2 cut(s) 22, 117
BstMWI GCNNNNNNNGC 3 cut(s) 83, 262, 271
BstNI CCWGG 2 cut(s) 60, 207
BstSCI CCNGG 2 cut(s) 58, 205
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 4 cut(s) 58, 205, 216, 265
BtgZI GCGATG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 41, 203, 263
DpnI GATC 2 cut(s) 24, 119
DpnII GATC 2 cut(s) 22, 117
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 58, 205
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaqI GGGAC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 87, 141
Fsp4HI GCNGC 2 cut(s) 87, 141
FspBI CTAG 3 cut(s) 92, 176, 252
GluI GCNGC 2 cut(s) 87, 141
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 2 cut(s) 81, 99
HaeIII GGCC 4 cut(s) 58, 205, 216, 265
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 262, 271
HpySE526I ACGT 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 22, 117
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 3 cut(s) 92, 176, 252
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 151, 166
MalI GATC 2 cut(s) 24, 119
MboI GATC 2 cut(s) 22, 117
MboII GAAGA 1 cut(s) 164
MluCI AATT 1 cut(s) 402
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 7 cut(s) 54, 56, 67, 94, 124, 142, 381
MseI TTAA 2 cut(s) 276, 393
MspR9I CCNGG 2 cut(s) 60, 207
MvaI CCWGG 2 cut(s) 60, 207
MwoI GCNNNNNNNGC 3 cut(s) 83, 262, 271
NdeII GATC 2 cut(s) 22, 117
NmuCI GTSAC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 88, 142
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 58, 205
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 2 cut(s) 58, 205
PspPI GGNCC 3 cut(s) 41, 203, 263
SaqAI TTAA 2 cut(s) 276, 393
SatI GCNGC 2 cut(s) 87, 141
Sau3AI GATC 2 cut(s) 22, 117
Sau96I GGNCC 3 cut(s) 41, 203, 263
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 60, 207
SetI ASST 7 cut(s) 9, 91, 109, 128, 135, 153, 399
SinI GGWCC 1 cut(s) 41
Sse9I AATT 1 cut(s) 402
SsiI CCGC 1 cut(s) 140
SspMI CTAG 3 cut(s) 92, 176, 252
StyD4I CCNGG 2 cut(s) 58, 205
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 128
TasI AATT 1 cut(s) 402
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 276, 393
Tru9I TTAA 2 cut(s) 276, 393
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 41
XspI CTAG 3 cut(s) 92, 176, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.