Rh7BG139700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002162
Physical Location & Seq
Forward (+)
10393056 .. 10394198
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG139700.1

Sequence Viewer

Length: 222 bp
ATGATCATGAGTGCTGGGACATGTTATGGCCTGAGTCGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCCGGAAGCAGGTTGGGTGTTGATCAGGGCGTTCGAGGTGGCGGCAGCGGTGACCAAGATGGCGGCGGCGGCGGAGGTGACCAAGTTGGCAGTAATTCTTCTAGGTTCTCAAGTCGCTGAGCTAACCTTTCGAGACAGTTTGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.61

Weight (kDa)

5.19

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 7 cut(s) 62, 113, 119, 134, 137, 140, 143
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 133, 160
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 124
BclI TGATCA 2 cut(s) 3, 93
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 68, 173
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 6 cut(s) 63, 114, 117, 135, 138, 141
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 6 cut(s) 64, 115, 118, 136, 139, 142
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 23, 180
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 3, 93
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 7 cut(s) 62, 113, 119, 134, 137, 140, 143
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 24, 181
BspEI TCCGGA 1 cut(s) 73
BspHI TCATGA 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 71
BssMI GATC 2 cut(s) 3, 93
Bst4CI ACNGT 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 32, 189
BstEII GGTNACC 2 cut(s) 121, 148
BstKTI GATC 2 cut(s) 6, 96
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 3, 93
BstMWI GCNNNNNNNGC 2 cut(s) 59, 140
BstNSI RCATGY 1 cut(s) 24
BstPI GGTNACC 2 cut(s) 121, 148
BstV1I GCAGC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 30
BveI ACCTGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 6
CviAII CATG 2 cut(s) 7, 21
CviJI RGCY 4 cut(s) 30, 53, 65, 193
CviKI_1 RGCY 4 cut(s) 30, 53, 65, 193
DdeI CTNAG 2 cut(s) 32, 189
DpnI GATC 2 cut(s) 5, 95
DpnII GATC 2 cut(s) 3, 93
EciI GGCGGA 1 cut(s) 158
Eco91I GGTNACC 2 cut(s) 121, 148
EcoO65I GGTNACC 2 cut(s) 121, 148
FaeI CATG 2 cut(s) 10, 24
FaiI YATR 3 cut(s) 8, 22, 27
FaqI GGGAC 1 cut(s) 31
FatI CATG 2 cut(s) 6, 20
FbaI TGATCA 2 cut(s) 3, 93
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 6 cut(s) 63, 114, 117, 135, 138, 141
Fsp4HI GCNGC 6 cut(s) 63, 114, 117, 135, 138, 141
FspBI CTAG 2 cut(s) 68, 173
GluI GCNGC 6 cut(s) 63, 114, 117, 135, 138, 141
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 74
Hin1II CATG 2 cut(s) 10, 24
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 133, 160
Hpy166II GTNNAC 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 7, 74, 203
Hpy8I GTNNAC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 140
HpyF3I CTNAG 2 cut(s) 32, 189
Hsp92II CATG 2 cut(s) 10, 24
Kpn2I TCCGGA 1 cut(s) 73
Ksp22I TGATCA 2 cut(s) 3, 93
Kzo9I GATC 2 cut(s) 3, 93
LpnPI CCDG 5 cut(s) 39, 44, 66, 82, 87
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 2 cut(s) 68, 173
MaeIII GTNAC 2 cut(s) 121, 148
MalI GATC 2 cut(s) 5, 95
MboI GATC 2 cut(s) 3, 93
MboII GAAGA 1 cut(s) 161
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 4 cut(s) 43, 52, 100, 139
MroI TCCGGA 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 59, 140
NdeII GATC 2 cut(s) 3, 93
NlaIII CATG 2 cut(s) 10, 24
NmuCI GTSAC 2 cut(s) 121, 148
NspI RCATGY 1 cut(s) 24
PagI TCATGA 1 cut(s) 6
PciI ACATGT 1 cut(s) 20
PkrI GCNGC 6 cut(s) 64, 115, 118, 136, 139, 142
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PscI ACATGT 1 cut(s) 20
PspEI GGTNACC 2 cut(s) 121, 148
PspFI CCCAGC 1 cut(s) 14
SalI GTCGAC 1 cut(s) 36
SatI GCNGC 6 cut(s) 63, 114, 117, 135, 138, 141
Sau3AI GATC 2 cut(s) 3, 93
SchI GAGTC 1 cut(s) 43
SetI ASST 6 cut(s) 85, 111, 150, 178, 195, 200
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 1 cut(s) 165
SsiI CCGC 7 cut(s) 62, 113, 119, 134, 137, 140, 143
SspMI CTAG 2 cut(s) 68, 173
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 3 cut(s) 37, 105, 202
TasI AATT 1 cut(s) 165
TauI GCSGC 5 cut(s) 65, 116, 137, 140, 143
TseFI GTSAC 2 cut(s) 121, 148
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 121, 148
XceI RCATGY 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 2 cut(s) 68, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.