Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

70478082 .. 70479246

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCCTCTTTTTCTCTCCTTCGAGTTATTCTAGGGTTTCTTGCTGTGGTGACTAATGGCGGCTCTGAAGTTTCGACCAGAATGGGCGGACATCCCTTCCCTTCTGGTTGCATTGACGATGGCGGCGTAGGAGCAATCCCTCACCTTCTCGTCTCGACTCTCGCAAGGGAGATCTCTCGACGGCAATCAACTTTAATTGATGGTGGTCTTGTACCTTGGAATCGGAAGGGCGAGGGTGCTCTCCCTTCTACTCCTCTTCTCGGCGGCGACTGGTATGGCAGCGCTGATGGTGATGATGGTCGTTCTTGTGTCTTAGGGTCAAGATTCGAGGTGTGGAGCTGGGTTGTGGAGGGAGGCTCTTCTATTGGAGGCGGTGGTGCATCCAGACCGGGCATCCTTCTCCATGATGTCGCTGTGGTGGGTGACCCGTTTCCTGAGGAAGACGATGGAGCTACATCCATGGATGAATGGGCGTCGGCGCTGGGTTTTGGTCTTTCGATCGGTGGTCAAGGTCTGGTCCCTTCCGGAGGCTATGATGGCTTTGCTCTGATACGGTCTTGTACTTCTCTGTACAAGGGACATGGTGGCTATGGTGTTCTCGTTGGCGGCGGCCTTGCTGGCTACAGCGACGGTGGTGGGATGGAGGCCACTAGAAGGATTCTTGGTGGCTTTGGGCTTTTGCTAGGGTTTCTCGTAATTGGGCCGGTTGGGTTAGCATGGGCTGGATTAACTTGGGCTCATAGCATGTTTAGGTTTATTGTTTTTATTTTAGCTTTGGGTTATTATCATTTTTCACGAAATGATGATGGCCCTATTATCTTCTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

28.55

Weight (kDa)

5.01

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	7 cut(s)	60, 87, 123, 264, 372, 606, 609
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	3 cut(s)	213, 562, 572
AfeI	AGCGCT	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	260, 527, 654
AluBI	AGCT	3 cut(s)	339, 452, 773
AluI	AGCT	3 cut(s)	339, 452, 773
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	524
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	4 cut(s)	610, 645, 701, 808
ApeKI	GCWGC	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	284, 481
AspS9I	GGNCC	3 cut(s)	517, 701, 809
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	61, 134, 302, 434
AvaII	GGWCC	1 cut(s)	517
AxyI	CCTNAGG	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	739
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	8 cut(s)	113, 194, 281, 290, 440, 530, 634, 800
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	3 cut(s)	32, 651, 683
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	2 cut(s)	285, 482
BglI	GCCNNNNNGGC	1 cut(s)	618
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	6 cut(s)	61, 124, 265, 280, 607, 610
BlsI	GCNGC	6 cut(s)	62, 125, 266, 281, 608, 611
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	3 cut(s)	517, 701, 809
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	389, 402
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpuMI	CCSGG	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	215, 459
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 527, 654
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	215, 459
BseGI	GGATG	6 cut(s)	91, 380, 393, 455, 469, 645
BseLI	CCNNNNNNNGG	3 cut(s)	260, 527, 654
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	2 cut(s)	339, 481
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	612, 647, 703, 810
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	389, 525, 704
BslFI	GGGAC	2 cut(s)	503, 591
BslI	CCNNNNNNNGG	3 cut(s)	260, 527, 654
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	503, 591
BsnI	GGCC	4 cut(s)	612, 647, 703, 810
Bsp1286I	GDGCHC	2 cut(s)	241, 739
Bsp13I	TCCGGA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	171, 498
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	7 cut(s)	60, 87, 123, 264, 372, 606, 609
BspANI	GGCC	4 cut(s)	612, 647, 703, 810
BspCNI	CTCAG	1 cut(s)	427
BspEI	TCCGGA	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	703
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	215, 459
BssMI	GATC	2 cut(s)	171, 498
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	215, 459
Bst4CI	ACNGT	2 cut(s)	555, 632
Bst6I	CTCTTC	2 cut(s)	261, 364
BstACI	GRCGYC	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	313, 435
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	422
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	6 cut(s)	91, 380, 393, 455, 469, 645
BstH2I	RGCGCY	2 cut(s)	285, 482
BstHHI	GCGC	2 cut(s)	284, 481
BstKTI	GATC	2 cut(s)	174, 501
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	171, 498
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	2 cut(s)	537, 618
BstNSI	RCATGY	1 cut(s)	748
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	622
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	612, 647, 703, 810
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	6 cut(s)	91, 380, 393, 455, 469, 645
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	2 cut(s)	284, 481
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	3 cut(s)	517, 701, 809
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	212, 561, 571
CviAII	CATG	5 cut(s)	404, 460, 581, 717, 745
CviQI	GTAC	3 cut(s)	212, 561, 571
DdeI	CTNAG	2 cut(s)	313, 435
DpnI	GATC	2 cut(s)	173, 500
DpnII	GATC	2 cut(s)	171, 498
Eam1104I	CTCTTC	2 cut(s)	261, 364
EarI	CTCTTC	2 cut(s)	261, 364
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	215, 459
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	517
Eco47III	AGCGCT	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	215, 459
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	2 cut(s)	215, 459
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	5 cut(s)	407, 463, 584, 720, 748
FaiI	YATR	9 cut(s)	276, 405, 461, 534, 582, 591, 718, 741, 746
FaqI	GGGAC	2 cut(s)	503, 591
FatI	CATG	5 cut(s)	403, 459, 580, 716, 744
Fnu4HI	GCNGC	6 cut(s)	61, 124, 265, 280, 607, 610
FokI	GGATG	6 cut(s)	78, 367, 380, 442, 476, 652
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	6 cut(s)	61, 124, 265, 280, 607, 610
FspBI	CTAG	3 cut(s)	32, 651, 683
GlaI	GCGC	2 cut(s)	283, 480
GluI	GCNGC	6 cut(s)	61, 124, 265, 280, 607, 610
GsaI	CCCAGC	2 cut(s)	343, 485
HaeII	RGCGCY	2 cut(s)	285, 482
HaeIII	GGCC	4 cut(s)	612, 647, 703, 810
HapII	CCGG	3 cut(s)	389, 525, 704
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	2 cut(s)	284, 481
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	5 cut(s)	407, 463, 584, 720, 748
Hin6I	GCGC	2 cut(s)	282, 479
HinP1I	GCGC	2 cut(s)	282, 479
HinfI	GANTC	4 cut(s)	157, 220, 324, 658
HpaII	CCGG	3 cut(s)	389, 525, 704
HphI	GGTGA	4 cut(s)	61, 134, 302, 434
Hpy188I	TCNGA	3 cut(s)	67, 225, 549
Hpy188III	TCNNGA	7 cut(s)	154, 177, 321, 384, 434, 525, 795
Hpy99I	CGWCG	3 cut(s)	183, 478, 632
HpyAV	CCTTC	9 cut(s)	29, 106, 111, 155, 220, 255, 407, 531, 648
HpyCH4III	ACNGT	2 cut(s)	555, 632
HpyCH4V	TGCA	2 cut(s)	111, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	537, 618
HpyF3I	CTNAG	2 cut(s)	313, 435
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	5 cut(s)	407, 463, 584, 720, 748
HspAI	GCGC	2 cut(s)	282, 479
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	171, 498
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	131, 336, 449
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	2 cut(s)	389, 402
MaeI	CTAG	3 cut(s)	32, 651, 683
MaeIII	GTNAC	2 cut(s)	49, 422
MalI	GATC	2 cut(s)	173, 500
MboI	GATC	2 cut(s)	171, 498
MboII	GAAGA	4 cut(s)	248, 351, 452, 811
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	241, 739
MluCI	AATT	2 cut(s)	195, 696
MlyI	GAGTC	1 cut(s)	151
MroI	TCCGGA	1 cut(s)	524
MseI	TTAA	2 cut(s)	194, 728
MspI	CCGG	3 cut(s)	389, 525, 704
MspR9I	CCNGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	537, 618
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	171, 498
NlaIII	CATG	5 cut(s)	407, 463, 584, 720, 748
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	49, 422
NspI	RCATGY	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	220, 324, 658
PkrI	GCNGC	6 cut(s)	62, 125, 266, 281, 608, 611
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	422
PspFI	CCCAGC	2 cut(s)	339, 481
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	3 cut(s)	517, 701, 809
PsuI	RGATCY	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	501
RsaI	GTAC	3 cut(s)	213, 562, 572
RsaNI	GTAC	3 cut(s)	212, 561, 571
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	194, 728
SatI	GCNGC	6 cut(s)	61, 124, 265, 280, 607, 610
Sau3AI	GATC	2 cut(s)	171, 498
Sau96I	GGNCC	3 cut(s)	517, 701, 809
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	241, 739
SetI	ASST	8 cut(s)	147, 217, 333, 341, 454, 514, 755, 775
SfaNI	GCATC	2 cut(s)	389, 402
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	517
Sse9I	AATT	2 cut(s)	195, 696
SsiI	CCGC	7 cut(s)	60, 87, 123, 264, 372, 606, 609
SspMI	CTAG	3 cut(s)	32, 651, 683
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	215, 459
TaaI	ACNGT	2 cut(s)	555, 632
TaqI	TCGA	6 cut(s)	22, 74, 155, 178, 327, 497
TasI	AATT	2 cut(s)	195, 696
TatI	WGTACW	2 cut(s)	560, 570
TauI	GCSGC	5 cut(s)	63, 126, 267, 609, 612
TfiI	GAWTC	3 cut(s)	220, 324, 658
Tru1I	TTAA	2 cut(s)	194, 728
Tru9I	TTAA	2 cut(s)	194, 728
TseFI	GTSAC	2 cut(s)	49, 422
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	2 cut(s)	49, 422
TspDTI	ATGAA	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	525
XceI	RCATGY	1 cut(s)	748
XspI	CTAG	3 cut(s)	32, 651, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.