Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

60685207 .. 60693138

Gene Structure 7932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCCTTTTTTTCTCTCCTCCGGGTTCTTCTAGGGTTTCTTGCTGTGGTGACTCATGGCGGCTCTGAAGTTTCGACCAGCATGGGCGGGCATCCCTTCCCTTCTGGTTGCATTGACGATGGCGGCGTAGGAGCAATCCCTCACCTTCTCGTCTCGACTCTCGCAAGGGAGATCTCTCGACGGCGATCGACATTAGTTGATGGTGGTCTTGTACCTTGGAATCGGAAGGGCGAGGGTGCTCTCCCTTCTACTCCTCTTCTCGGCGGCGGCTGGTATGGCAGCGCTGATGGTGATGATGGTCGTTCTTGTGTCTTCGGGTCAAGTTTAGCAGTGTGGAGCTGGGGTGTGGAGGAAGGCTCTTCTACTGGAGGTGTTGGTGCATCCAGACCGGGCTTCCTTCTCCAAGATGTCGCTGTGGTGGGTGACCCTGTTCCTGAGGAAGACGATGGAGCTACATCCATGGATGAATGGACGTCGGCGCCGGGTTTTGGCTTTTCGATCGGTGGTCAAGGTCTAGTCCCTCCCGGAAGCTATGATGGCTTTGATCTGATACGGTCTTGTACTTCTCCGTACAAGGACGATGGTGGCTATGGTGTTCTCGCTGGCGGCGGCCTTGCTGGCTACAGCGTCGATGGTGGGATGGAGGCCACCAGAAGGATTCTTGGTGGCTTTGGGCTTTTGCTAAGAAGAAGGACTCTAACGTCTCCGGCGACTATGTCTTCGCTCGCCTCGATCTACTCCACCATCGAGTCCGACATTGAAGCTGTTCTTCAGGAGACTCCGCTTCGAGCTGCTGTAAATTATGGCGAAGCTTCCGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

28.14

Weight (kDa)

4.5

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	700
AatII	GACGTC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	478
AciI	CCGC	8 cut(s)	60, 87, 123, 264, 267, 606, 609, 782
AcuI	CTGAAG	2 cut(s)	87, 755
AcyI	GRCGYC	2 cut(s)	473, 479
AfaI	GTAC	3 cut(s)	213, 562, 572
AfeI	AGCGCT	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	260, 488, 654
AgsI	TTSAA	1 cut(s)	761
AluBI	AGCT	6 cut(s)	339, 452, 531, 764, 791, 812
AluI	AGCT	6 cut(s)	339, 452, 531, 764, 791, 812
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	157, 708, 770
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	2 cut(s)	610, 645
ApeKI	GCWGC	2 cut(s)	279, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	2 cut(s)	284, 481
AsuC2I	CCSGG	4 cut(s)	23, 390, 483, 525
AsuHPI	GGTGA	4 cut(s)	61, 134, 302, 434
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	478
BbsI	GAAGAC	3 cut(s)	304, 447, 711
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	291, 778
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	4 cut(s)	23, 390, 483, 525
BcoDI	GTCTC	3 cut(s)	157, 708, 770
BfaI	CTAG	2 cut(s)	32, 515
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	2 cut(s)	285, 482
BglI	GCCNNNNNGGC	1 cut(s)	618
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	8 cut(s)	61, 124, 265, 268, 280, 607, 610, 792
BlsI	GCNGC	8 cut(s)	62, 125, 266, 269, 281, 608, 611, 793
Bme1390I	CCNGG	4 cut(s)	23, 390, 483, 525
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	4 cut(s)	23, 390, 483, 525
BmsI	GCATC	2 cut(s)	100, 389
BpiI	GAAGAC	3 cut(s)	304, 447, 711
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	387
BpuMI	CCSGG	4 cut(s)	23, 390, 483, 525
BsaHI	GRCGYC	2 cut(s)	473, 479
BsaJI	CCNNGG	2 cut(s)	215, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 488, 654
Bse1I	ACTGG	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	215, 459
BseGI	GGATG	5 cut(s)	91, 380, 455, 469, 645
BseLI	CCNNNNNNNGG	3 cut(s)	260, 488, 654
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	8, 243
BseXI	GCAGC	2 cut(s)	291, 778
BseYI	CCCAGC	1 cut(s)	339
Bsh1285I	CGRYCG	2 cut(s)	188, 501
BshFI	GGCC	2 cut(s)	612, 647
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	2 cut(s)	188, 501
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	22, 389, 482, 525, 707
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	260, 488, 654
BsmAI	GTCTC	3 cut(s)	157, 708, 770
BsmBI	CGTCTC	2 cut(s)	157, 708
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	612, 647
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	171, 185, 498, 544, 732
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	8 cut(s)	60, 87, 123, 264, 267, 606, 609, 782
BspANI	GGCC	2 cut(s)	612, 647
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	480
BspQI	GCTCTTC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	215, 459
BssMI	GATC	5 cut(s)	171, 185, 498, 544, 732
BssNI	GRCGYC	2 cut(s)	473, 479
BssT1I	CCWWGG	2 cut(s)	215, 459
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	2 cut(s)	261, 364
BstACI	GRCGYC	2 cut(s)	473, 479
BstC8I	GCNNGC	4 cut(s)	89, 604, 619, 726
BstDEI	CTNAG	2 cut(s)	435, 683
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	5 cut(s)	91, 380, 455, 469, 645
BstH2I	RGCGCY	2 cut(s)	285, 482
BstHHI	GCGC	2 cut(s)	284, 481
BstKTI	GATC	5 cut(s)	174, 188, 501, 547, 735
BstMAI	GTCTC	3 cut(s)	157, 708, 770
BstMBI	GATC	5 cut(s)	171, 185, 498, 544, 732
BstMCI	CGRYCG	2 cut(s)	188, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 537, 618
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	21, 388, 481, 523
BstSFI	CTRYAG	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	291, 778
BstV2I	GAAGAC	3 cut(s)	304, 447, 711
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	612, 647
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	5 cut(s)	91, 380, 455, 469, 645
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	89, 604, 619, 726
CfoI	GCGC	2 cut(s)	284, 481
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	3 cut(s)	212, 561, 571
CviAII	CATG	3 cut(s)	56, 82, 460
CviQI	GTAC	3 cut(s)	212, 561, 571
DdeI	CTNAG	2 cut(s)	435, 683
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	5 cut(s)	173, 187, 500, 546, 734
DpnII	GATC	5 cut(s)	171, 185, 498, 544, 732
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	261, 364
EarI	CTCTTC	2 cut(s)	261, 364
Eco130I	CCWWGG	2 cut(s)	215, 459
Eco47III	AGCGCT	1 cut(s)	283
Eco57I	CTGAAG	2 cut(s)	87, 755
Eco81I	CCTNAGG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	422
EcoO65I	GGTNACC	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	215, 459
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	215, 459
Esp3I	CGTCTC	2 cut(s)	157, 708
FaeI	CATG	3 cut(s)	59, 85, 463
FaiI	YATR	8 cut(s)	57, 83, 276, 461, 534, 591, 716, 804
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	55, 81, 459
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	8 cut(s)	61, 124, 265, 268, 280, 607, 610, 792
FokI	GGATG	5 cut(s)	78, 367, 442, 476, 652
Fsp4HI	GCNGC	8 cut(s)	61, 124, 265, 268, 280, 607, 610, 792
FspBI	CTAG	2 cut(s)	32, 515
GlaI	GCGC	2 cut(s)	283, 480
GluI	GCNGC	8 cut(s)	61, 124, 265, 268, 280, 607, 610, 792
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	2 cut(s)	285, 482
HaeIII	GGCC	2 cut(s)	612, 647
HapII	CCGG	5 cut(s)	22, 389, 482, 525, 707
HgaI	GACGC	1 cut(s)	616
HhaI	GCGC	2 cut(s)	284, 481
Hin1I	GRCGYC	2 cut(s)	473, 479
Hin1II	CATG	3 cut(s)	59, 85, 463
Hin6I	GCGC	2 cut(s)	282, 479
HinP1I	GCGC	2 cut(s)	282, 479
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	7 cut(s)	52, 157, 220, 658, 694, 749, 778
HpaII	CCGG	5 cut(s)	22, 389, 482, 525, 707
HphI	GGTGA	4 cut(s)	61, 134, 302, 434
Hpy188I	TCNGA	5 cut(s)	67, 225, 549, 754, 817
Hpy188III	TCNNGA	5 cut(s)	154, 177, 384, 434, 773
Hpy99I	CGWCG	3 cut(s)	183, 478, 632
HpyAV	CCTTC	9 cut(s)	106, 111, 155, 220, 255, 347, 407, 648, 684
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	2 cut(s)	473, 701
HpyCH4V	TGCA	2 cut(s)	111, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 537, 618
HpyF3I	CTNAG	2 cut(s)	435, 683
HpySE526I	ACGT	2 cut(s)	473, 701
Hsp92I	GRCGYC	2 cut(s)	473, 479
Hsp92II	CATG	3 cut(s)	59, 85, 463
HspAI	GCGC	2 cut(s)	282, 479
KasI	GGCGCC	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	171, 185, 498, 544, 732
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	131, 336, 449
Lsp1109I	GCAGC	2 cut(s)	291, 778
LweI	GCATC	2 cut(s)	100, 389
MaeI	CTAG	2 cut(s)	32, 515
MaeII	ACGT	2 cut(s)	473, 701
MaeIII	GTNAC	2 cut(s)	49, 422
MalI	GATC	5 cut(s)	173, 187, 500, 546, 734
MboI	GATC	5 cut(s)	171, 185, 498, 544, 732
MboII	GAAGA	8 cut(s)	20, 248, 304, 351, 452, 699, 711, 761
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	799
Mly113I	GGCGCC	1 cut(s)	479
MlyI	GAGTC	5 cut(s)	46, 151, 688, 758, 772
MmeI	TCCRAC	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	765
MspI	CCGG	5 cut(s)	22, 389, 482, 525, 707
MspR9I	CCNGG	4 cut(s)	23, 390, 483, 525
MwoI	GCNNNNNNNGC	3 cut(s)	276, 537, 618
NarI	GGCGCC	1 cut(s)	479
NciI	CCSGG	4 cut(s)	23, 390, 483, 525
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	5 cut(s)	171, 185, 498, 544, 732
NlaIII	CATG	3 cut(s)	59, 85, 463
NlaIV	GGNNCC	1 cut(s)	480
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	49, 422
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 707, 728
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	220, 658
PflFI	GACNNNGTC	1 cut(s)	715
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	8 cut(s)	62, 125, 266, 269, 281, 608, 611, 793
Ple19I	CGATCG	2 cut(s)	188, 501
PleI	GAGTC	5 cut(s)	46, 151, 688, 757, 772
PluTI	GGCGCC	1 cut(s)	482
PpsI	GAGTC	5 cut(s)	46, 151, 688, 757, 772
PspEI	GGTNACC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	715
PvuI	CGATCG	2 cut(s)	188, 501
RsaI	GTAC	3 cut(s)	213, 562, 572
RsaNI	GTAC	3 cut(s)	212, 561, 571
SapI	GCTCTTC	1 cut(s)	364
SatI	GCNGC	8 cut(s)	61, 124, 265, 268, 280, 607, 610, 792
Sau3AI	GATC	5 cut(s)	171, 185, 498, 544, 732
SchI	GAGTC	5 cut(s)	46, 151, 688, 758, 772
ScrFI	CCNGG	4 cut(s)	23, 390, 483, 525
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	100, 389
SfcI	CTRYAG	1 cut(s)	622
SfoI	GGCGCC	1 cut(s)	480
Sse9I	AATT	1 cut(s)	799
SsiI	CCGC	8 cut(s)	60, 87, 123, 264, 267, 606, 609, 782
SspDI	GGCGCC	1 cut(s)	478
SspMI	CTAG	2 cut(s)	32, 515
StyD4I	CCNGG	4 cut(s)	21, 388, 481, 523
StyI	CCWWGG	2 cut(s)	215, 459
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	2 cut(s)	476, 704
TaqI	TCGA	9 cut(s)	74, 155, 178, 188, 497, 630, 731, 747, 787
TasI	AATT	1 cut(s)	799
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	6 cut(s)	63, 126, 267, 270, 609, 612
TfiI	GAWTC	2 cut(s)	220, 658
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	49, 422
TseI	GCWGC	2 cut(s)	279, 791
Tsp45I	GTSAC	2 cut(s)	49, 422
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	32, 515
ZraI	GACGTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.