Rh7AG068700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002162
Physical Location & Seq
Forward (+)
4824660 .. 4825034
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG068700.1

Sequence Viewer

Length: 375 bp
ATGGAGGGAGGCTCTTCTACTGGAGGCGGTGATGCATCCAAACCGGGCTTCCTTCTCTATGATGTCGCTGTGGTGGGTGATTTTGTTCCTGAGGAAGATGATGGAGCTACATGTATGGATGAATGGGCGTTGGCGTCGGGTTTTGGCTTTTCGATCGGTGGTCAAGGTCTGGTCCCTTCTGGAGGCTATGATGGCTTTGATCTGATACAGTCTTACACTTCTACGTACAAGGACGATGGTGGCTATGGTGTTCTCGCTGGCGACGGCCTTGCTGACTACAGCGGCGGTGGTGGGTTGGAGGACACTAGCAGGGCTCTTGGTGGCTTTGGGCTTTTGCTAAGGTTTCTCATAATTGGGCCTGTTGGGTTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

12.42

Weight (kDa)

4.05

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 282, 285
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AoxI GGCC 2 cut(s) 265, 356
AspS9I GGNCC 2 cut(s) 172, 356
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 41, 89
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 316
BccI CCATC 3 cut(s) 95, 185, 230
BceAI ACGGC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 172, 356
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 22, 44
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 42, 201
Bpu10I CCTNAGC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 35, 124
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 267, 358
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 2 cut(s) 267, 358
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 2 cut(s) 153, 199
BspACI CCGC 3 cut(s) 27, 282, 285
BspANI GGCC 2 cut(s) 267, 358
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 25
BssMI GATC 2 cut(s) 153, 199
BssNI GRCGYC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 90, 338
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 35, 124
BstKTI GATC 2 cut(s) 156, 202
BstMBI GATC 2 cut(s) 153, 199
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 277
BstSNI TACGTA 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 267, 358
BtsCI GGATG 2 cut(s) 35, 124
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 172, 356
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 111
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 90, 338
DpnI GATC 2 cut(s) 155, 201
DpnII GATC 2 cut(s) 153, 199
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco105I TACGTA 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 1 cut(s) 114
FaiI YATR 7 cut(s) 60, 112, 116, 189, 246, 350, 373
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 22, 131
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 283
GsuI CTGGAG 2 cut(s) 42, 201
HaeIII GGCC 2 cut(s) 267, 358
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 114
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 41, 89
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 89, 180
Hpy99I CGWCG 2 cut(s) 139, 266
HpyAV CCTTC 2 cut(s) 62, 186
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 90, 338
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 153, 199
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 6, 57, 102, 155, 165, 243, 295
LweI GCATC 2 cut(s) 22, 44
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 224
MalI GATC 2 cut(s) 155, 201
MboI GATC 2 cut(s) 153, 199
MboII GAAGA 2 cut(s) 6, 107
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 4 cut(s) 17, 85, 176, 292
Mph1103I ATGCAT 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 153, 199
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 1 cut(s) 114
PciI ACATGT 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 284
Ple19I CGATCG 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 225
PscI ACATGT 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 2 cut(s) 172, 356
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 19
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 153, 199
Sau96I GGNCC 2 cut(s) 172, 356
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 109, 169, 227, 344
SfaNI GCATC 2 cut(s) 22, 44
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 172
SnaBI TACGTA 1 cut(s) 225
Sse9I AATT 1 cut(s) 351
SsiI CCGC 3 cut(s) 27, 282, 285
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 351
TauI GCSGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 172
XagI CCTNNNNNAGG 1 cut(s) 180
XceI RCATGY 1 cut(s) 114
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.