Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

3258546 .. 3261908

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTCTGGTCGGATTTCTTCGTCAAATTCCTCGACAAAACCTTGACCTCTTCAAATTCCTCAATTTCTTCATTGGCAGATCTGCTTCTAGCCGGATCGGTGATAGATCTTCACCGGATGTTCCAAATCTCAAGATGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGCAGGGAAAGTTGATATCTTGGTTTCGGGGATAGGAATCGGTGGCACAGTAACTGGTATAGGGAAATTCCTTAAAGAGCAAAATCCAGAGATCAAGGTGTACGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGTGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTGCTGGCTTCATTCCTCAATTTCTTGATGTTAGCCTGCCAGACGAAGTTATTCCAGTATCTGGTGAGGAATCTATTGAGACTGCTAAGCTACTTACCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCGCGCAGCAGCAATAAAGTTGGCAAAAAAGCAAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTAGGAGAGCGGTATATATCTGTCTACTGCACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

211

Amino Acids

22.89

Weight (kDa)

9.74

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	49 - 168	4.1e-25	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	592
AccII	CGCG	1 cut(s)	499
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	2 cut(s)	104, 334
AcsI	RAATTY	3 cut(s)	27, 56, 245
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	413, 570
AgsI	TTSAA	2 cut(s)	55, 313
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	168, 425
AlwI	GGATC	2 cut(s)	104, 334
AlwNI	CAGNNNCTG	2 cut(s)	233, 413
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	488, 501, 504
ApoI	RAATTY	3 cut(s)	27, 56, 245
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	499, 501
AspS9I	GGNCC	2 cut(s)	158, 320
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	105, 113, 428
AvaII	GGWCC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	475, 513, 516
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	168, 425
BfaI	CTAG	1 cut(s)	90
BglII	AGATCT	2 cut(s)	80, 107
BisI	GCNGC	3 cut(s)	489, 502, 505
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	3 cut(s)	490, 503, 506
Bme1390I	CCNGG	2 cut(s)	161, 327
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	158, 320
BmrFI	CCNGG	2 cut(s)	161, 327
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 570
Bse1I	ACTGG	5 cut(s)	160, 238, 293, 407, 565
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	413, 570
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	5 cut(s)	160, 238, 293, 407, 565
BsePI	GCGCGC	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	475, 513, 516
BsgI	GTGCAG	2 cut(s)	324, 581
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	94, 116, 161, 538
BslI	CCNNNNNNNGG	2 cut(s)	413, 570
BsmAI	GTCTC	2 cut(s)	168, 425
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	80, 96, 107, 270, 339
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	104, 334
BsrBI	CCGCTC	1 cut(s)	578
BsrI	ACTGG	5 cut(s)	160, 238, 293, 407, 565
BssECI	CCNNGG	1 cut(s)	343
BssHII	GCGCGC	1 cut(s)	497
BssMI	GATC	5 cut(s)	80, 96, 107, 270, 339
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	229, 284
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	358, 389, 499
BstDEI	CTNAG	2 cut(s)	178, 438
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	499, 501
BstKTI	GATC	5 cut(s)	83, 99, 110, 273, 342
BstMAI	GTCTC	2 cut(s)	168, 425
BstMBI	GATC	5 cut(s)	80, 96, 107, 270, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	159, 325
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	475, 513, 516
BstX2I	RGATCY	2 cut(s)	80, 107
BstYI	RGATCY	2 cut(s)	80, 107
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	358, 389, 499
CaiI	CAGNNNCTG	2 cut(s)	233, 413
CfoI	GCGC	2 cut(s)	499, 501
Cfr13I	GGNCC	2 cut(s)	158, 320
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	619, 633
CviJI	RGCY	5 cut(s)	93, 159, 360, 387, 442
CviKI_1	RGCY	5 cut(s)	93, 159, 360, 387, 442
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	178, 438
DpnI	GATC	5 cut(s)	82, 98, 109, 272, 341
DpnII	GATC	5 cut(s)	80, 96, 107, 270, 339
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	622, 636
FaiI	YATR	7 cut(s)	147, 169, 239, 583, 585, 620, 634
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	2 cut(s)	618, 632
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	489, 502, 505
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	489, 502, 505
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	498, 500
GluI	GCNGC	3 cut(s)	489, 502, 505
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	4 cut(s)	94, 116, 161, 538
HhaI	GCGC	2 cut(s)	499, 501
Hin1II	CATG	2 cut(s)	622, 636
Hin6I	GCGC	2 cut(s)	497, 499
HinP1I	GCGC	2 cut(s)	497, 499
HinfI	GANTC	6 cut(s)	139, 176, 216, 348, 422, 474
HpaII	CCGG	4 cut(s)	94, 116, 161, 538
HphI	GGTGA	3 cut(s)	105, 113, 428
Hpy166II	GTNNAC	3 cut(s)	280, 323, 593
Hpy188I	TCNGA	2 cut(s)	14, 339
Hpy188III	TCNNGA	4 cut(s)	133, 266, 310, 377
Hpy8I	GTNNAC	3 cut(s)	280, 323, 593
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	2 cut(s)	229, 284
HpyCH4V	TGCA	3 cut(s)	305, 491, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	2 cut(s)	178, 438
Hsp92II	CATG	2 cut(s)	622, 636
HspAI	GCGC	2 cut(s)	497, 499
Kzo9I	GATC	5 cut(s)	80, 96, 107, 270, 339
Lsp1109I	GCAGC	3 cut(s)	475, 513, 516
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	5 cut(s)	82, 98, 109, 272, 341
MbiI	CCGCTC	1 cut(s)	578
MboI	GATC	5 cut(s)	80, 96, 107, 270, 339
MboII	GAAGA	4 cut(s)	11, 43, 61, 102
MflI	RGATCY	2 cut(s)	80, 107
MluCI	AATT	5 cut(s)	27, 56, 64, 245, 371
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	42, 59, 71, 378, 412, 615
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	252, 452
MspI	CCGG	4 cut(s)	94, 116, 161, 538
MspR9I	CCNGG	2 cut(s)	161, 327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	80, 96, 107, 270, 339
NlaIII	CATG	2 cut(s)	622, 636
PauI	GCGCGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	5 cut(s)	139, 216, 348, 422, 474
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	490, 503, 506
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspPI	GGNCC	2 cut(s)	158, 320
PstNI	CAGNNNCTG	2 cut(s)	233, 413
PsuI	RGATCY	2 cut(s)	80, 107
PteI	GCGCGC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	252, 452
SatI	GCNGC	3 cut(s)	489, 502, 505
Sau3AI	GATC	5 cut(s)	80, 96, 107, 270, 339
Sau96I	GGNCC	2 cut(s)	158, 320
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	161, 327
SetI	ASST	7 cut(s)	45, 51, 279, 328, 444, 452, 463
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	5 cut(s)	27, 56, 64, 245, 371
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	159, 325
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	229, 284
TaqI	TCGA	1 cut(s)	34
TasI	AATT	5 cut(s)	27, 56, 64, 245, 371
TfiI	GAWTC	5 cut(s)	139, 216, 348, 422, 474
Tru1I	TTAA	2 cut(s)	252, 452
Tru9I	TTAA	2 cut(s)	252, 452
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	3 cut(s)	488, 501, 504
TspDTI	ATGAA	4 cut(s)	61, 131, 162, 352
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	3 cut(s)	27, 56, 245
XmiI	GTMKAC	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.