Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

48846753 .. 48847393

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTGGTATGGGTTTGTGTTCTGGGAGTACGATCGGTGGTGGAGATAGTGTTCTCTCATATTTGGATTGTTGGGGTTCCGGGAGGCTTGCCGGTGGGATGGATTGGGATTGGGATGCTAGAAGATTGGGGGATCAGCGGTGAAGGGCTCTGGTGGCTGACGATTGGGCATCTAGTTAGGCCGGTGACATCAACAGAGCCATTGTGCTTGAGGCCGGGTGCTTTGCAGAGTTTATTTTCTCGGGATGGGGTCAACCTCAGCTCCGGTGGTGGCAACAACGGCTTAGGGGGCGGTGATATGTGCTGGGGTGTCTCTTCTACTTGCGGCGGTAGAGGTGGTGGCTGGACGATGAAGGCGGCGGGGAAGATGGTTGCTGGGCTTTTAGGGTATACTCTAGTGGCTTTTGGTGGGTTTGGGCTTATTGGCGCTTGGGCCTTGAAGGTGGTTTGGCTGGTTTGGGCTTCTATGGCCCAGAGTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

16.7

Weight (kDa)

7.69

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	6 cut(s)	138, 291, 324, 327, 356, 359
AclWI	GGATC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	30, 478
AgsI	TTSAA	1 cut(s)	439
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	4 cut(s)	179, 212, 432, 468
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	432, 469
AsuC2I	CCSGG	2 cut(s)	81, 216
AsuHPI	GGTGA	3 cut(s)	152, 196, 305
AvaI	CYCGRG	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	257
BccI	CCATC	3 cut(s)	93, 239, 361
BceAI	ACGGC	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	81, 216
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	3 cut(s)	119, 173, 395
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	2 cut(s)	325, 357
BlsI	GCNGC	2 cut(s)	326, 358
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	81, 216
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	432, 469
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	81, 216
BmsI	GCATC	2 cut(s)	105, 178
Bpu10I	CCTNAGC	2 cut(s)	257, 283
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	2 cut(s)	81, 216
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 245, 275
Bse118I	RCCGGY	2 cut(s)	91, 181
BseGI	GGATG	3 cut(s)	104, 120, 250
BseMII	CTCAG	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	303, 374
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	181, 214, 434, 470
BsiEI	CGRYCG	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	5 cut(s)	80, 92, 182, 215, 264
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	4 cut(s)	181, 214, 434, 470
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	32, 132
BspACI	CCGC	6 cut(s)	138, 291, 324, 327, 356, 359
BspANI	GGCC	4 cut(s)	181, 214, 434, 470
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	91, 181
BssAI	RCCGGY	2 cut(s)	91, 181
BssMI	GATC	2 cut(s)	32, 132
BssNAI	GTATAC	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	257, 283
BstF5I	GGATG	3 cut(s)	104, 120, 250
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	2 cut(s)	35, 135
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	32, 132
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 279, 288, 467
BstSCI	CCNGG	2 cut(s)	79, 214
BstZ17I	GTATAC	1 cut(s)	390
BsuRI	GGCC	4 cut(s)	181, 214, 434, 470
BtsCI	GGATG	3 cut(s)	104, 120, 250
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	2 cut(s)	91, 181
Cfr13I	GGNCC	2 cut(s)	432, 469
Csp6I	GTAC	2 cut(s)	29, 477
CviQI	GTAC	2 cut(s)	29, 477
DdeI	CTNAG	2 cut(s)	257, 283
DpnI	GATC	2 cut(s)	34, 134
DpnII	GATC	2 cut(s)	32, 132
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	5 cut(s)	10, 60, 299, 390, 467
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	325, 357
FokI	GGATG	3 cut(s)	111, 127, 257
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	325, 357
FspBI	CTAG	3 cut(s)	119, 173, 395
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	325, 357
GsaI	CCCAGC	2 cut(s)	307, 378
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	4 cut(s)	181, 214, 434, 470
HapII	CCGG	5 cut(s)	80, 92, 182, 215, 264
HhaI	GCGC	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	5 cut(s)	80, 92, 182, 215, 264
HphI	GGTGA	3 cut(s)	152, 196, 305
Hpy166II	GTNNAC	2 cut(s)	253, 390
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	253, 390
HpyAV	CCTTC	3 cut(s)	137, 346, 433
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 279, 288, 467
HpyF3I	CTNAG	2 cut(s)	257, 283
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	32, 132
LmnI	GCTCC	1 cut(s)	266
LweI	GCATC	2 cut(s)	105, 178
MaeI	CTAG	3 cut(s)	119, 173, 395
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	34, 134
MboI	GATC	2 cut(s)	32, 132
MboII	GAAGA	3 cut(s)	134, 306, 376
MhlI	GDGCHC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	77, 204, 266, 326
MseI	TTAA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	5 cut(s)	80, 92, 182, 215, 264
MspR9I	CCNGG	2 cut(s)	81, 216
MwoI	GCNNNNNNNGC	4 cut(s)	154, 279, 288, 467
NciI	CCSGG	2 cut(s)	81, 216
NdeII	GATC	2 cut(s)	32, 132
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	326, 358
Ple19I	CGATCG	1 cut(s)	35
PspFI	CCCAGC	2 cut(s)	303, 374
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	432, 469
PvuI	CGATCG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	30, 478
RsaNI	GTAC	2 cut(s)	29, 477
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	2 cut(s)	325, 357
Sau3AI	GATC	2 cut(s)	32, 132
Sau96I	GGNCC	2 cut(s)	432, 469
ScaI	AGTACT	1 cut(s)	478
ScrFI	CCNGG	2 cut(s)	81, 216
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	258, 263, 337, 444
SfaNI	GCATC	2 cut(s)	105, 178
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SsiI	CCGC	6 cut(s)	138, 291, 324, 327, 356, 359
SspMI	CTAG	3 cut(s)	119, 173, 395
StyD4I	CCNGG	2 cut(s)	79, 214
TaaI	ACNGT	1 cut(s)	481
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	2 cut(s)	327, 359
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	3 cut(s)	119, 173, 395
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.