Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003322.1

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

74617 .. 77921

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003322.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgttgccgctggaagataaatccgacgacactaagtttcaccctgccactaggcggagatcaacaaaagtgcatgttgtagacatcaaccattttgtttcttttagaaaaacctatggttttctctttgtccctcataagagggttgtggtctcttgctcttggctgtttttgcgggattgggatcagaagcccgatttggtgttggattgtttcaaaacctgtgatcctcagattgggaggattggggaagggttgaagcgggggtcggtttggttgaagacgtcctgcgatagtaagcagcctgccaatggtgacggggactggtgggttccggattggatggatcttttttctccatccgatggtggtgacggatctttcgaagtgttggacggtagcggtgctggtttggtgaattggtcatggcactcttctagcggaggtggagactggtcgtggtattctactcttgccggcagcaatgatcatgagtgctataacatgttctggcctgagttgacttgttttggaggctggagaggtggctctagttccagaagcaggttgggtgttgatcatggtgttcaaggtggtggcggcggcgacggcacccaaatccgccacgtaacaaacgaggatcaagtgaagagcctcatcgaatcaacggtccaaatgcacggccgcctggaggtacatcattttcagcaacgccggaatattctgctgtctgagcagacggtgctggagtttgaattatccaagtacgacaagctcatggcggtcaatgtacgtgggatggcggcgtgtgtgaagcacgcggcgcgggccatggtggaaggtggagttaaggggagcgtgacattcacggcgagcgttgtagcgactactggattagagtggttcaaagactacaccatgtcaaagcacgccattttggggctggtgaggtcggcgagtgtccagctcggcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

325

Amino Acids

36.03

Weight (kDa)

6.67

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	821, 826
AccIII	TCCGGA	1 cut(s)	334
AclWI	GGATC	5 cut(s)	192, 221, 354, 385, 648
AcoI	YGGCCR	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	3 cut(s)	696, 767, 792
AfiI	CCNNNNNNNGG	7 cut(s)	54, 236, 311, 365, 564, 691, 939
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	217, 259, 280, 590, 755, 907
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	775, 967
AluI	AGCT	2 cut(s)	775, 967
Alw26I	GTCTC	2 cut(s)	157, 444
AlwI	GGATC	5 cut(s)	192, 221, 354, 385, 648
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	3 cut(s)	512, 682, 828
ApeKI	GCWGC	2 cut(s)	301, 480
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 654, 686
AspLEI	GCGC	2 cut(s)	826, 974
AspS9I	GGNCC	2 cut(s)	670, 828
AsuHPI	GGTGA	5 cut(s)	32, 326, 383, 427, 958
AsuII	TTCGAA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	313, 492
BccI	CCATC	4 cut(s)	337, 359, 367, 793
BceAI	ACGGC	3 cut(s)	625, 697, 885
BciT130I	CCWGG	1 cut(s)	689
BclI	TGATCA	2 cut(s)	487, 577
BcoDI	GTCTC	2 cut(s)	157, 444
BfaI	CTAG	3 cut(s)	51, 438, 552
BfoI	RGCGCY	1 cut(s)	975
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	8 cut(s)	8, 302, 481, 601, 604, 685, 804, 822
BlsI	GCNGC	8 cut(s)	9, 303, 482, 602, 605, 686, 805, 823
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	670, 828
BmiI	GGNNCC	2 cut(s)	333, 613
BmrFI	CCNGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	3 cut(s)	559, 710, 767
Bpu14I	TTCGAA	1 cut(s)	384
BsaAI	YACGTR	2 cut(s)	628, 794
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	831
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 236, 311, 365, 564, 691, 939
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	329, 458, 895
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	3 cut(s)	348, 359, 804
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	7 cut(s)	54, 236, 311, 365, 564, 691, 939
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	3 cut(s)	245, 507, 723
BseNI	ACTGG	3 cut(s)	329, 458, 895
BseX3I	CGGCCG	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	313, 492
Bsh1236I	CGCG	2 cut(s)	821, 826
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	3 cut(s)	514, 684, 830
BshNI	GGYRCC	1 cut(s)	611
BsiEI	CGRYCG	1 cut(s)	685
BsiSI	CCGG	3 cut(s)	335, 477, 715
BslFI	GGGAC	2 cut(s)	116, 335
BslI	CCNNNNNNNGG	7 cut(s)	54, 236, 311, 365, 564, 691, 939
BsmAI	GTCTC	2 cut(s)	157, 444
BsmFI	GGGAC	2 cut(s)	116, 335
BsnI	GGCC	3 cut(s)	514, 684, 830
Bso31I	GGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
Bsp19I	CCATGG	1 cut(s)	831
BspANI	GGCC	3 cut(s)	514, 684, 830
BspCNI	CTCAG	3 cut(s)	244, 508, 724
BspEI	TCCGGA	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	821, 826
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	333, 613
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	5 cut(s)	192, 221, 354, 385, 648
BspQI	GCTCTTC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	329, 458, 895
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	398, 670, 742
Bst6I	CTCTTC	2 cut(s)	439, 644
BstACI	GRCGYC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstBAI	YACGTR	2 cut(s)	628, 794
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	6 cut(s)	306, 478, 819, 828, 874, 930
BstDEI	CTNAG	4 cut(s)	33, 231, 516, 732
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	348, 359, 804
BstFNI	CGCG	2 cut(s)	821, 826
BstH2I	RGCGCY	1 cut(s)	975
BstHHI	GCGC	2 cut(s)	826, 974
BstKTI	GATC	8 cut(s)	62, 187, 229, 349, 380, 490, 580, 643
BstMAI	GTCTC	2 cut(s)	157, 444
BstMBI	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 609, 733, 742, 823, 827
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	2 cut(s)	77, 508
BstSCI	CCNGG	1 cut(s)	687
BstUI	CGCG	2 cut(s)	821, 826
BstV1I	GCAGC	2 cut(s)	313, 492
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	346, 377
BstYI	RGATCY	2 cut(s)	346, 377
BstZI	CGGCCG	1 cut(s)	682
BsuRI	GGCC	3 cut(s)	514, 684, 830
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	348, 359, 804
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	6 cut(s)	306, 478, 819, 828, 874, 930
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	2 cut(s)	826, 974
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	670, 828
Csp6I	GTAC	3 cut(s)	695, 766, 791
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	8 cut(s)	74, 426, 491, 505, 581, 778, 832, 919
CviQI	GTAC	3 cut(s)	695, 766, 791
DdeI	CTNAG	4 cut(s)	33, 231, 516, 732
DpnI	GATC	8 cut(s)	61, 186, 228, 348, 379, 489, 579, 642
DpnII	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
EaeI	YGGCCR	1 cut(s)	682
EagI	CGGCCG	1 cut(s)	682
Eam1104I	CTCTTC	2 cut(s)	439, 644
EarI	CTCTTC	2 cut(s)	439, 644
EciI	GGCGGA	2 cut(s)	70, 611
EclXI	CGGCCG	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	831
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	670
Eco52I	CGGCCG	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	8 cut(s)	77, 429, 494, 508, 584, 781, 835, 922
FaqI	GGGAC	2 cut(s)	116, 335
FatI	CATG	8 cut(s)	73, 425, 490, 504, 580, 777, 831, 918
FauI	CCCGC	3 cut(s)	168, 255, 819
FbaI	TGATCA	2 cut(s)	487, 577
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	8 cut(s)	8, 302, 481, 601, 604, 685, 804, 822
FokI	GGATG	3 cut(s)	346, 355, 811
Fsp4HI	GCNGC	8 cut(s)	8, 302, 481, 601, 604, 685, 804, 822
FspBI	CTAG	3 cut(s)	51, 438, 552
GlaI	GCGC	2 cut(s)	825, 973
GluI	GCNGC	8 cut(s)	8, 302, 481, 601, 604, 685, 804, 822
GsuI	CTGGAG	3 cut(s)	559, 710, 767
HaeII	RGCGCY	1 cut(s)	975
HaeIII	GGCC	3 cut(s)	514, 684, 830
HapII	CCGG	3 cut(s)	335, 477, 715
HhaI	GCGC	2 cut(s)	826, 974
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	8 cut(s)	77, 429, 494, 508, 584, 781, 835, 922
Hin6I	GCGC	2 cut(s)	824, 972
HinP1I	GCGC	2 cut(s)	824, 972
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	3 cut(s)	335, 477, 715
HphI	GGTGA	5 cut(s)	32, 326, 383, 427, 958
Hpy166II	GTNNAC	2 cut(s)	82, 522
Hpy188I	TCNGA	5 cut(s)	25, 189, 234, 364, 733
Hpy188III	TCNNGA	3 cut(s)	335, 491, 558
Hpy8I	GTNNAC	2 cut(s)	82, 522
Hpy99I	CGWCG	2 cut(s)	29, 611
HpyAV	CCTTC	2 cut(s)	245, 833
HpyCH4III	ACNGT	3 cut(s)	398, 670, 742
HpyCH4IV	ACGT	3 cut(s)	284, 627, 793
HpyCH4V	TGCA	2 cut(s)	73, 679
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 609, 733, 742, 823, 827
HpyF3I	CTNAG	4 cut(s)	33, 231, 516, 732
HpySE526I	ACGT	3 cut(s)	284, 627, 793
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	8 cut(s)	77, 429, 494, 508, 584, 781, 835, 922
HspAI	GCGC	2 cut(s)	824, 972
Kpn2I	TCCGGA	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Ksp22I	TGATCA	2 cut(s)	487, 577
Kzo9I	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	855
Lsp1109I	GCAGC	2 cut(s)	313, 492
MaeI	CTAG	3 cut(s)	51, 438, 552
MaeII	ACGT	3 cut(s)	284, 627, 793
MaeIII	GTNAC	4 cut(s)	314, 371, 628, 859
MalI	GATC	8 cut(s)	61, 186, 228, 348, 379, 489, 579, 642
MboI	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
MboII	GAAGA	4 cut(s)	26, 292, 426, 661
MflI	RGATCY	2 cut(s)	346, 377
MluCI	AATT	2 cut(s)	418, 755
MmeI	TCCRAC	3 cut(s)	48, 186, 372
MroI	TCCGGA	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	476
MseI	TTAA	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	3 cut(s)	335, 477, 715
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	2 cut(s)	821, 826
MwoI	GCNNNNNNNGC	6 cut(s)	172, 609, 733, 742, 823, 827
NaeI	GCCGGC	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
NgoMIV	GCCGGC	1 cut(s)	476
NlaIII	CATG	8 cut(s)	77, 429, 494, 508, 584, 781, 835, 922
NlaIV	GGNNCC	2 cut(s)	333, 613
NmeAIII	GCCGAG	1 cut(s)	948
NmuCI	GTSAC	3 cut(s)	314, 371, 859
NspI	RCATGY	2 cut(s)	77, 508
NspV	TTCGAA	1 cut(s)	384
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 633
PdiI	GCCGGC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	8 cut(s)	9, 303, 482, 602, 605, 686, 805, 823
Ppu21I	YACGTR	2 cut(s)	628, 794
PscI	ACATGT	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	333, 613
PspPI	GGNCC	2 cut(s)	670, 828
PsuI	RGATCY	2 cut(s)	346, 377
RsaI	GTAC	3 cut(s)	696, 767, 792
RsaNI	GTAC	3 cut(s)	695, 766, 791
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	8 cut(s)	8, 302, 481, 601, 604, 685, 804, 822
Sau3AI	GATC	8 cut(s)	59, 184, 226, 346, 377, 487, 577, 640
Sau96I	GGNCC	2 cut(s)	670, 828
ScrFI	CCNGG	1 cut(s)	689
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	1 cut(s)	670
Sse9I	AATT	2 cut(s)	418, 755
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	3 cut(s)	51, 438, 552
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	398, 670, 742
TaiI	ACGT	3 cut(s)	287, 630, 796
TaqI	TCGA	2 cut(s)	384, 660
TasI	AATT	2 cut(s)	418, 755
TauI	GCSGC	6 cut(s)	10, 603, 606, 687, 806, 824
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TseFI	GTSAC	3 cut(s)	314, 371, 859
TseI	GCWGC	2 cut(s)	301, 480
Tsp45I	GTSAC	3 cut(s)	314, 371, 859
TspGWI	ACGGA	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	670
XceI	RCATGY	2 cut(s)	77, 508
XcmI	CCANNNNNNNNNTGG	2 cut(s)	565, 940
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	3 cut(s)	51, 438, 552
ZraI	GACGTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.