Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

14406555 .. 14407035

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCCAGAGATAGTAGGCAGCCTGCCATTGGTGACGGGGACTGGTGGGAACCAGATTGGATGGATCTTTTTTCTCCATCCGATGGTGGCGACGGACCTTTCAATGTGTTGGACGGCAGCGGTGTTGGTTCTGGCCTGAGGCCACTTGTGTTGGAGTCTGGAGAGGCGGCTCTAGTCTTGGAAGTAGGTTGGGTGTTGAGCATGGCGTTCGAGGTGGCGGTAACGGGGATCAAGATGGCGGCGGCGGTAGAGGCGACCAAGTTGGCAGTAATTCTTCTAGGATTTGTGTTGAATGGTTGTCTTGGGCTTGGGTCTGGTCTTGGTTGGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTGGTGGGCCTGCTGGGATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

12.99

Weight (kDa)

4.05

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	6 cut(s)	120, 167, 218, 239, 242, 245
AclWI	GGATC	2 cut(s)	72, 236
AfiI	CCNNNNNNNGG	5 cut(s)	29, 83, 339, 353, 359
AgsI	TTSAA	2 cut(s)	103, 292
AjnI	CCWGG	1 cut(s)	352
AlwI	GGATC	2 cut(s)	72, 236
AoxI	GGCC	3 cut(s)	133, 140, 365
ApeKI	GCWGC	2 cut(s)	19, 117
AspS9I	GGNCC	2 cut(s)	95, 365
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	31, 129
BccI	CCATC	4 cut(s)	55, 77, 85, 229
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	354
BfaI	CTAG	2 cut(s)	173, 278
BisI	GCNGC	5 cut(s)	20, 118, 168, 240, 243
BlsI	GCNGC	5 cut(s)	21, 119, 169, 241, 244
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 365
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 83, 339, 353, 359
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	66, 77
BseLI	CCNNNNNNNGG	5 cut(s)	29, 83, 339, 353, 359
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	31, 129
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	3 cut(s)	135, 142, 367
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	5 cut(s)	29, 83, 339, 353, 359
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	135, 142, 367
Bsp143I	GATC	2 cut(s)	64, 228
BspACI	CCGC	6 cut(s)	120, 167, 218, 239, 242, 245
BspANI	GGCC	3 cut(s)	135, 142, 367
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	72, 236
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	64, 228
Bst2UI	CCWGG	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	24, 369
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	66, 77
BstKTI	GATC	2 cut(s)	67, 231
BstMBI	GATC	2 cut(s)	64, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 364
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	31, 129
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	135, 142, 367
BtsCI	GGATG	2 cut(s)	66, 77
Cac8I	GCNNGC	2 cut(s)	24, 369
Cfr13I	GGNCC	2 cut(s)	95, 365
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	22, 135, 142, 170, 307, 358, 367
CviKI_1	RGCY	7 cut(s)	22, 135, 142, 170, 307, 358, 367
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	66, 230
DpnII	GATC	2 cut(s)	64, 228
Eco47I	GGWCC	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	205
FaiI	YATR	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	20, 118, 168, 240, 243
FokI	GGATG	2 cut(s)	64, 73
Fsp4HI	GCNGC	5 cut(s)	20, 118, 168, 240, 243
FspBI	CTAG	2 cut(s)	173, 278
GluI	GCNGC	5 cut(s)	20, 118, 168, 240, 243
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	135, 142, 367
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	2 cut(s)	155, 329
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	6, 159, 232
Hpy99I	CGWCG	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 364
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	64, 228
Lsp1109I	GCAGC	2 cut(s)	31, 129
MaeI	CTAG	2 cut(s)	173, 278
MaeIII	GTNAC	2 cut(s)	32, 220
MalI	GATC	2 cut(s)	66, 230
MboI	GATC	2 cut(s)	64, 228
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	164, 338
MmeI	TCCRAC	2 cut(s)	90, 132
MnlI	CCTC	4 cut(s)	132, 157, 205, 244
MseI	TTAA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	251, 364
NdeII	GATC	2 cut(s)	64, 228
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	21, 119, 169, 241, 244
PleI	GAGTC	2 cut(s)	163, 337
PpsI	GAGTC	2 cut(s)	163, 337
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	95, 365
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	5 cut(s)	20, 118, 168, 240, 243
Sau3AI	GATC	2 cut(s)	64, 228
Sau96I	GGNCC	2 cut(s)	95, 365
SchI	GAGTC	2 cut(s)	164, 338
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	3 cut(s)	100, 190, 216
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	6 cut(s)	120, 167, 218, 239, 242, 245
SspMI	CTAG	2 cut(s)	173, 278
StyD4I	CCNGG	1 cut(s)	352
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	270
TauI	GCSGC	3 cut(s)	170, 242, 245
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	19, 117
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	95
XspI	CTAG	2 cut(s)	173, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.