Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

19222982 .. 19223329

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG207400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTGGTGACCCTAGTGTTGAGGAAGATGATGGGGCTACATCAATTGGTGCATGGGCGACGGCGCCAGGTTTTGGATTTGCAATTGGCGGTAAAGGTCTGGTCCCTTATGATGTCTTTGACGATTTTGATCTGCCTTTGTGTTGTACTTTGCAGTACAAGGATAGTGGTGGTTATGGTGTTATCGTTGGCGGAGGCTTTGCTGGCTACGGCCGCGGCAGTGGTTTGGAGGCCACCAAAGTTGCAATTGATCTTGGTGGCTTTAGGCTTTTTATAGGGTTTCTCATAATTGGGCCTTTTGGGCTAGTGTGGGCTGGATTAGCTTGCATTCATAACATTTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

11.8

Weight (kDa)

4.17

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	90, 192, 214, 216
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	148, 158
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
AoxI	GGCC	3 cut(s)	211, 231, 293
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	103, 293
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	64
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	78, 226
BciT130I	CCWGG	1 cut(s)	69
BfaI	CTAG	2 cut(s)	15, 305
BfoI	RGCGCY	1 cut(s)	68
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	214, 217
BlsI	GCNGC	2 cut(s)	215, 218
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 293
BmiI	GGNNCC	2 cut(s)	66, 105
BmrFI	CCNGG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	213, 233, 295
BshNI	GGYRCC	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	3 cut(s)	213, 233, 295
Bsp143I	GATC	2 cut(s)	130, 250
BspACI	CCGC	4 cut(s)	90, 192, 214, 216
BspANI	GGCC	3 cut(s)	213, 233, 295
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	66, 105
BspT107I	GGYRCC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	130, 250
BssNI	GRCGYC	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	205, 325
BstDSI	CCRYGG	1 cut(s)	214
BstEII	GGTNACC	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	133, 253
BstMBI	GATC	2 cut(s)	130, 250
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 213, 301, 320
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	213, 233, 295
BtgI	CCRYGG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	205, 325
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	103, 293
Cfr42I	CCGCGG	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	147, 157
CspCI	CAANNNNNGTGG	4 cut(s)	148, 183, 223, 258
CviAII	CATG	1 cut(s)	54
CviQI	GTAC	2 cut(s)	147, 157
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	2 cut(s)	132, 252
DpnII	GATC	2 cut(s)	130, 250
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	207
EclXI	CGGCCG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	67
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
FaeI	CATG	1 cut(s)	57
FaiI	YATR	6 cut(s)	55, 111, 177, 275, 287, 333
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	214, 217
Fsp4HI	GCNGC	2 cut(s)	214, 217
FspBI	CTAG	2 cut(s)	15, 305
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	214, 217
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	213, 233, 295
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	53, 83, 154, 245, 327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 213, 301, 320
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	57
HspAI	GCGC	1 cut(s)	65
KasI	GGCGCC	1 cut(s)	64
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	130, 250
LpnPI	CCDG	5 cut(s)	54, 81, 86, 189, 300
MaeI	CTAG	2 cut(s)	15, 305
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	132, 252
MboI	GATC	2 cut(s)	130, 250
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	3 cut(s)	45, 84, 246
MluCI	AATT	4 cut(s)	45, 84, 246, 288
Mly113I	GGCGCC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	16, 188, 223
MseI	TTAA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	3 cut(s)	45, 84, 246
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	204, 213, 301, 320
NarI	GGCGCC	1 cut(s)	65
NdeII	GATC	2 cut(s)	130, 250
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	2 cut(s)	66, 105
NmuCI	GTSAC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	215, 218
PluTI	GGCGCC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	66, 105
PspPI	GGNCC	2 cut(s)	103, 293
RsaI	GTAC	2 cut(s)	148, 158
RsaNI	GTAC	2 cut(s)	147, 157
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	2 cut(s)	214, 217
Sau3AI	GATC	2 cut(s)	130, 250
Sau96I	GGNCC	2 cut(s)	103, 293
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	3 cut(s)	73, 100, 325
SfoI	GGCGCC	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	45, 84, 246, 288
SsiI	CCGC	4 cut(s)	90, 192, 214, 216
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	15, 305
StyD4I	CCNGG	1 cut(s)	67
TasI	AATT	4 cut(s)	45, 84, 246, 288
TatI	WGTACW	2 cut(s)	146, 156
TauI	GCSGC	2 cut(s)	216, 219
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	103
XspI	CTAG	2 cut(s)	15, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.