Rroxscaffold_6G00393640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002162
Physical Location & Seq
Reverse (-)
13776156 .. 13782678
6523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393640.1

Sequence Viewer

Length: 465 bp
ATGACGGTGACGAAACCTTTCCGGCGGATTTTAGGCCCTCTCGGATCCGTTTCTCGATCCGAATCTTGGCCGGTCTTCCTTGGGGAACCCGACGGCGACGAAGACGTAAGGTGGTTGAGGTTGAGGTCGGCGATGGTGCGCGTGGAGGAAGAAGCCGCGGAGACGAGCTCGTCGGCCAAAGCTTCAAGATCCGCCGGAATTATAAAGTGGCCAGTAGTGTGGCTGCAATGCCTTGTTGCTTATCCGGACTCCCATCAAACTATGGTGTCTCATGGCAGCACTACGACCTCATCTAGAACGGTCGGGATTCCTGTTCCAACTAGTTCCCTTGAAGATGGCGACGCTGGAGCAATTCATCGATGCCTATTACCGACTCCCGCGAGGGAGATTTCTCTTCTGCGATTGACTTTTGTTGGTGGTGGACTTGTATTTTGGAGTAAGAGAAGTGGCGGTGCTCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.65

Weight (kDa)

8.77

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AasI GACNNNNNNGTC 1 cut(s) 169
AccII CGCG 3 cut(s) 141, 158, 380
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 6 cut(s) 25, 156, 158, 192, 378, 450
AclWI GGATC 4 cut(s) 39, 51, 52, 183
AcoI YGGCCR 3 cut(s) 68, 174, 209
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 186, 332
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 2 cut(s) 168, 182
AluI AGCT 2 cut(s) 168, 182
Alw21I GWGCWC 2 cut(s) 170, 457
Alw26I GTCTC 2 cut(s) 155, 273
AlwI GGATC 4 cut(s) 39, 51, 52, 183
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 4 cut(s) 34, 68, 174, 209
ApeKI GCWGC 2 cut(s) 223, 276
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 19
BalI TGGCCA 1 cut(s) 211
BamHI GGATCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 67, 108
Bbv12I GWGCWC 2 cut(s) 170, 457
BbvI GCAGC 2 cut(s) 210, 288
BccI CCATC 3 cut(s) 127, 261, 329
BceAI ACGGC 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 155, 273
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 294, 321
BisI GCNGC 3 cut(s) 156, 224, 277
BlsI GCNGC 3 cut(s) 157, 225, 278
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 46, 87
BmsI GCATC 1 cut(s) 350
BpiI GAAGAC 2 cut(s) 67, 108
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 79, 156
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 79, 156
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 210, 288
Bsh1236I CGCG 3 cut(s) 141, 158, 380
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 36, 70, 176, 211
BshVI ATCGAT 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 170, 457
BsiSI CCGG 4 cut(s) 22, 71, 195, 245
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 155, 273
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 4 cut(s) 36, 70, 176, 211
Bsp1286I GDGCHC 2 cut(s) 170, 457
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 3 cut(s) 44, 56, 188
BspACI CCGC 6 cut(s) 25, 156, 158, 192, 378, 450
BspANI GGCC 4 cut(s) 36, 70, 176, 211
BspDI ATCGAT 1 cut(s) 358
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 3 cut(s) 141, 158, 380
BspLI GGNNCC 2 cut(s) 46, 87
BspPI GGATC 4 cut(s) 39, 51, 52, 183
BspQI GCTCTTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 79, 156
BssMI GATC 3 cut(s) 44, 56, 188
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 7, 301
Bst6I CTCTTC 2 cut(s) 399, 462
BstDSI CCRYGG 1 cut(s) 156
BstFNI CGCG 3 cut(s) 141, 158, 380
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 47, 59, 191
BstMAI GTCTC 2 cut(s) 155, 273
BstMBI GATC 3 cut(s) 44, 56, 188
BstMCI CGRYCG 1 cut(s) 303
BstUI CGCG 3 cut(s) 141, 158, 380
BstV1I GCAGC 2 cut(s) 210, 288
BstV2I GAAGAC 2 cut(s) 67, 108
BstX2I RGATCY 2 cut(s) 44, 188
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 2 cut(s) 44, 188
Bsu15I ATCGAT 1 cut(s) 358
BsuRI GGCC 4 cut(s) 36, 70, 176, 211
BsuTUI ATCGAT 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 146
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 35
Cfr42I CCGCGG 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 358
CseI GACGC 1 cut(s) 350
CviAII CATG 1 cut(s) 272
CviJI RGCY 8 cut(s) 36, 70, 155, 168, 176, 182, 211, 223
CviKI_1 RGCY 8 cut(s) 36, 70, 155, 168, 176, 182, 211, 223
DpnI GATC 3 cut(s) 46, 58, 190
DpnII GATC 3 cut(s) 44, 56, 188
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 3 cut(s) 68, 174, 209
Eam1104I CTCTTC 2 cut(s) 399, 462
EarI CTCTTC 2 cut(s) 399, 462
EciI GGCGGA 2 cut(s) 40, 181
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 275
FaiI YATR 3 cut(s) 203, 263, 273
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 156, 224, 277
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 156, 224, 277
FspBI CTAG 2 cut(s) 294, 321
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 156, 224, 277
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 4 cut(s) 36, 70, 176, 211
HapII CCGG 4 cut(s) 22, 71, 195, 245
HgaI GACGC 1 cut(s) 350
HhaI GCGC 1 cut(s) 141
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 4 cut(s) 62, 248, 307, 373
HpaII CCGG 4 cut(s) 22, 71, 195, 245
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 44, 61
Hpy188III TCNNGA 5 cut(s) 54, 186, 245, 294, 304
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 4 cut(s) 95, 101, 175, 344
HpyCH4III ACNGT 2 cut(s) 7, 301
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 139
Kpn2I TCCGGA 1 cut(s) 244
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 3 cut(s) 44, 56, 188
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 7 cut(s) 35, 84, 208, 225, 258, 324, 330
Lsp1109I GCAGC 2 cut(s) 210, 288
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 294, 321
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 46, 58, 190
MboI GATC 3 cut(s) 44, 56, 188
MboII GAAGA 6 cut(s) 67, 113, 161, 344, 386, 449
MflI RGATCY 2 cut(s) 44, 188
MhlI GDGCHC 2 cut(s) 170, 457
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 2 cut(s) 198, 351
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 2 cut(s) 242, 367
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 6 cut(s) 48, 111, 117, 139, 298, 375
Mox20I TGGCCA 1 cut(s) 211
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 4 cut(s) 22, 71, 195, 245
MvnI CGCG 3 cut(s) 141, 158, 380
NdeII GATC 3 cut(s) 44, 56, 188
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 46, 87
NmuCI GTSAC 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 307
PkrI GCNGC 3 cut(s) 157, 225, 278
PleI GAGTC 2 cut(s) 242, 367
PpsI GAGTC 2 cut(s) 242, 367
PsiI TTATAA 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 46, 87
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 2 cut(s) 44, 188
SacI GAGCTC 1 cut(s) 170
SacII CCGCGG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 462
SatI GCNGC 3 cut(s) 156, 224, 277
Sau3AI GATC 3 cut(s) 44, 56, 188
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 2 cut(s) 242, 367
SduI GDGCHC 2 cut(s) 170, 457
SetI ASST 8 cut(s) 19, 108, 113, 122, 128, 170, 184, 290
SfaNI GCATC 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 2 cut(s) 198, 351
SsiI CCGC 6 cut(s) 25, 156, 158, 192, 378, 450
SspMI CTAG 2 cut(s) 294, 321
SstI GAGCTC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 7, 301
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 55, 358
TasI AATT 2 cut(s) 198, 351
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 62, 307
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 223, 276
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 2 cut(s) 294, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.