Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

43027049 .. 43027603

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATCTCCCTTCTGAGAGTGTTTCTAGGGTTTCTGGCTGTGGTGTCTCATCGCGGAGCTGCAAACTCGGCCAGTACTGGCTGGTTTCCCGTTTCTTCTGGTTCCTTTGAAGACGACGGCGAGGGAGTCCTTCATCGACGCCTATTCCTGATTCCTGCAAGGGAGATTTCTCAACTGCAATTGATTTCTATTGGTGTAATGCGTGCGGTTGGCCTGGGATTGGATTTTGACAAGGGCGGTGGAACTCTCTCCTCTTTGTTGGATTTGTACCTGGCGCGAGCTGGTCTGAGGGTGGAACTGCGTGGTGGAGGCAACAACTTATGCGGCGGCAGTGGTGTAGATGAGGCTGACGCGTGGGAAGATTGCTTGGCGGCTAGGGACGCTAGGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

13.87

Weight (kDa)

5.26

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	54, 277, 353
AciI	CCGC	6 cut(s)	54, 206, 237, 324, 327, 371
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	2 cut(s)	76, 269
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	213, 270
AluBI	AGCT	2 cut(s)	59, 281
AluI	AGCT	2 cut(s)	59, 281
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	2 cut(s)	69, 211
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	215, 272
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	4 cut(s)	26, 375, 384, 394
BisI	GCNGC	4 cut(s)	60, 325, 328, 372
BlsI	GCNGC	4 cut(s)	61, 326, 329, 373
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	215, 272
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	215, 272
BpiI	GAAGAC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	72, 82
BseBI	CCWGG	2 cut(s)	215, 272
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	5, 278
BseNI	ACTGG	2 cut(s)	72, 82
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	3 cut(s)	54, 277, 353
BshFI	GGCC	2 cut(s)	71, 213
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	71, 213
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	6 cut(s)	54, 206, 237, 324, 327, 371
BspANI	GGCC	2 cut(s)	71, 213
BspCNI	CTCAG	2 cut(s)	6, 279
BspFNI	CGCG	3 cut(s)	54, 277, 353
BspLI	GGNNCC	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	72, 82
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	215, 272
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	204, 279
BstDEI	CTNAG	2 cut(s)	14, 287
BstFNI	CGCG	3 cut(s)	54, 277, 353
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 380
BstNI	CCWGG	2 cut(s)	215, 272
BstSCI	CCNGG	2 cut(s)	213, 270
BstUI	CGCG	3 cut(s)	54, 277, 353
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	71, 213
BtgZI	GCGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	204, 279
CfoI	GCGC	1 cut(s)	277
CseI	GACGC	3 cut(s)	147, 359, 389
Csp6I	GTAC	2 cut(s)	75, 268
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviJI	RGCY	8 cut(s)	38, 59, 71, 81, 213, 281, 347, 374
CviKI_1	RGCY	8 cut(s)	38, 59, 71, 81, 213, 281, 347, 374
CviQI	GTAC	2 cut(s)	75, 268
DdeI	CTNAG	2 cut(s)	14, 287
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	213, 270
FaiI	YATR	1 cut(s)	322
FaqI	GGGAC	1 cut(s)	392
Fnu4HI	GCNGC	4 cut(s)	60, 325, 328, 372
Fsp4HI	GCNGC	4 cut(s)	60, 325, 328, 372
FspBI	CTAG	4 cut(s)	26, 375, 384, 394
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	4 cut(s)	60, 325, 328, 372
HaeIII	GGCC	2 cut(s)	71, 213
HgaI	GACGC	3 cut(s)	147, 359, 389
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	126, 151
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	15, 288
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	2 cut(s)	119, 141
HpyAV	CCTTC	2 cut(s)	20, 140
HpyCH4V	TGCA	3 cut(s)	62, 158, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 380
HpyF3I	CTNAG	2 cut(s)	14, 287
Hsp92I	GRCGYC	1 cut(s)	139
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	4 cut(s)	26, 375, 384, 394
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	87, 122, 371
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	1 cut(s)	179
MluI	ACGCGT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	115, 262, 282, 302, 337
MspR9I	CCNGG	2 cut(s)	215, 272
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	215, 272
MvnI	CGCG	3 cut(s)	54, 277, 353
MwoI	GCNNNNNNNGC	2 cut(s)	68, 380
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	61, 326, 329, 373
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	213, 270
PspGI	CCWGG	2 cut(s)	213, 270
PspN4I	GGNNCC	1 cut(s)	103
RsaI	GTAC	2 cut(s)	76, 269
RsaNI	GTAC	2 cut(s)	75, 268
SatI	GCNGC	4 cut(s)	60, 325, 328, 372
Sau3AI	GATC	1 cut(s)	3
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	215, 272
SetI	ASST	3 cut(s)	61, 273, 283
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	6 cut(s)	54, 206, 237, 324, 327, 371
SspMI	CTAG	4 cut(s)	26, 375, 384, 394
StyD4I	CCNGG	2 cut(s)	213, 270
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	179
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	3 cut(s)	327, 330, 374
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	337
XspI	CTAG	4 cut(s)	26, 375, 384, 394
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.