Rh7AG220200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002162
Physical Location & Seq
Forward (+)
20466381 .. 20469259
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG220200.1

Sequence Viewer

Length: 279 bp
ATGAACGTTTCGGAGTCGGCATTGGTTGTCGTAGCTATAGCCCGTAAAGGAGAGCTTGTGATTGTTGGAGGTCGAGTCGAAGGAAGTGAGTCGAAGATTGGGGACGTTGACCTAGTCATGATAGTTGCTGAAATAGCTAGATCTGACAAAGGCGCCGGCCGTTACTCGCAAGACGTACAAGTACACCTTCGAGCGCAACCTCGGTTTCCCTCTCCTCCCCAACGTCTTCTAGATTTATTTCGAGATGAAGAGAATGTGAGGGCCGGAGGGACACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.93

Weight (kDa)

5.77

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AclI AACGTT 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 177, 183
AluBI AGCT 3 cut(s) 35, 55, 137
AluI AGCT 3 cut(s) 35, 55, 137
AoxI GGCC 2 cut(s) 157, 261
AspLEI GCGC 2 cut(s) 155, 196
AspS9I GGNCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 144
BfaI CTAG 3 cut(s) 113, 138, 230
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 156
BglII AGATCT 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 42, 60, 72, 90
Bse118I RCCGGY 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 204
BseX3I CGGCCG 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 159, 263
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 2 cut(s) 156, 264
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 159, 263
Bsp143I GATC 1 cut(s) 140
BspANI GGCC 2 cut(s) 159, 263
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 196
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 159, 263
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 117
CfoI GCGC 2 cut(s) 155, 196
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 176, 182
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 35, 41, 55, 137, 159, 263
CviKI_1 RGCY 6 cut(s) 35, 41, 55, 137, 159, 263
CviQI GTAC 2 cut(s) 176, 182
DinI GGCGCC 1 cut(s) 154
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 157
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EclXI CGGCCG 1 cut(s) 157
Eco52I CGGCCG 1 cut(s) 157
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 38, 119, 277
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 171, 203
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 117
FspBI CTAG 3 cut(s) 113, 138, 230
GlaI GCGC 2 cut(s) 154, 195
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 159, 263
HapII CCGG 2 cut(s) 156, 264
HhaI GCGC 2 cut(s) 155, 196
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 2 cut(s) 153, 194
HinP1I GCGC 2 cut(s) 153, 194
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 3 cut(s) 14, 75, 89
HpaII CCGG 2 cut(s) 156, 264
Hpy166II GTNNAC 2 cut(s) 109, 184
Hpy188I TCNGA 2 cut(s) 13, 145
Hpy188III TCNNGA 3 cut(s) 118, 230, 242
Hpy8I GTNNAC 2 cut(s) 109, 184
HpyAV CCTTC 2 cut(s) 74, 197
HpyCH4IV ACGT 4 cut(s) 6, 105, 174, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 4 cut(s) 6, 105, 174, 223
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 2 cut(s) 153, 194
KasI GGCGCC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 1 cut(s) 169
MaeI CTAG 3 cut(s) 113, 138, 230
MaeII ACGT 4 cut(s) 6, 105, 174, 223
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 3 cut(s) 106, 218, 260
MflI RGATCY 1 cut(s) 140
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 23, 84, 98
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 62, 210, 220, 225, 252, 260
MroNI GCCGGC 1 cut(s) 155
MspI CCGG 2 cut(s) 156, 264
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 153
NdeII GATC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 154
PagI TCATGA 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 157
PflFI GACNNNGTC 1 cut(s) 113
PleI GAGTC 3 cut(s) 22, 83, 97
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 22, 83, 97
Psp1406I AACGTT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 2 cut(s) 177, 183
RsaNI GTAC 2 cut(s) 176, 182
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 3 cut(s) 23, 84, 98
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 154
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 3 cut(s) 113, 138, 230
TaiI ACGT 4 cut(s) 9, 108, 177, 226
TaqI TCGA 5 cut(s) 73, 78, 92, 190, 241
TatI WGTACW 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 17, 261
Tth111I GACNNNGTC 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 3 cut(s) 113, 138, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.